Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3559 ATGTCCACCACTAACGAAGATTTTCAAGGTGTTTCAAATTGTTATGTGTTCAAGAGCCAATTGCAAGAGTATGCACAGAAAGCAGGACTTGGCACACCTGTGTATGAAACTACCAAGGAAGGGCCTTCCCATGAACCTTCTTTCAGGTCAACAGTGATTATGAATGATGTTCGTTATGATTCTTTGGCTGGATTTTTTAACCGTAAAGCAGCAGAGCAGTCAGCTGCAGAGGTTGCTTTGATGGAGTTGGCCAAAACTGGTGAAGTTAACCAGTCTATTACTCAACCTGTTCATGAAACTGGATTGTGCAAGAATTTACTTCAGGAATATGCACAGAAGATGAATTATGCAATGCCATTGTATCAGAGCAAAAAGGATGACACACCACCAGGCAGGGCACCATTATATTCGTGTACGGTTGACATTGGAGGGATGCTCTATATTGGAGGAACAGCGAAAACAAAGAGGGAAGCTGAGATAAAAGCTGCGAGAACTGCTTTATTAGCTATCCAGACAAATGCATCTCAGGCTTCTGAAAACCAGTTTGGCCATTTGACTGTCATTCCATCCAGAAAAAGGGCAACGGAATCTATTGCTGATGAGGCTTCGAAAGCTCCGAAGTCTAAGAAATCACGCTTTAAAGGGAAATATTCCAAGAAGAAACCGCATAGAAATAAGAAGCGCCGTATTAACGCTGACAATGCTGGTGATGAAGCAAAGATCGATAATGGGGCAGAATCACTGGCAAGTGCTAATGATGAATCTGGCCTCCAGGAAATCAAATCTGAAGCAGCATTCCCTTCAGAAGTCATGAAAAATTCTGAGAACGGAGTATCATCTAATCATCATGAGAAAGAGACATTAGCTGGTCTCCAGGAAATCAAATCTGAAGCAGCATTCCCTTCGGAAGCCATGCAGTATTATGATAATGGAGTATCAACTAATCATCATGAGAAAGAGACATTAGCTGGCCTCCAGGAAGTCAAATCTGAAGCAGCATTTCCTTCAGAAGCCATGAAGAATTCTGAGAACGGAGCATCAACTAATTATCATGAGAAAGAGACATCAGCTGGCCTCCAGGAAGTCAAATCTGAAGCAGCATTCCCACCAGATGAAGCCATGCAGAATTCTGAGAACGGAGTGCCAACTAATCATCATGAGAAAGAGACATTAGGTGCCATAAAGGAAGTCAAATCGGAAGCAGCATTCCCTTCAGATGAAGCCATGCAGAATTCTGAGAACGGAGCATCAACTAATCATCATGAGAAAGAGACATTAGCTGCCATCCAGGAAGTCAAATCTGAAGCAGCATTCCCTTCAGATGAAGCCATGCAGAATTCTGAGAACGGGGTGTCAACTAATCATCATGAGAAAGAGACGTTAGCTACCATCCAGGAAATCAAATCTGAAGCAGCATTCCCTTCAGATGAAACCATGATGAATTCTGAGAATGGAGTCTCAACTAATCATCATGAGAAAGAGACATTAGCTGCCATCCAGGAAATCAAATCTGAAGCAGCATTCCCTTCAGATGAAGCCACGATGAATTCTGAGAACGGAGTCTCGACTAATCATCATGAGAAAGAGACATTAGCTGCCATCCAGGAAATCAAATCTGAAGCAGCATTCCTTTCAGAAGCCATGACGAATTCTGAGAACCGAGTCTCGACTAATCATCATGAGGAAGAGAAATTAGCAGGCGTCCAGGAAATCAAATCTGAAGCAGCATTCCTTTCAGAAGTCATGAAGAATTCTGGGAGTGATATATCAACTAATCTTCATGAGAAAGAGATGTACCAGTCATTTGTTTTGAATAATCAAGAGAATTTTGAAAGTGGGAAGTTAACAGAATTGCAATCCAAAGAGATCAATATTGGGAATGTTGTCACAGAAGTGTCATTTGCTCCCGAGGGATACATACTGGCGATGAGCGTGGAGATGAACAAACAGAATTGCAATGGAGATATGGTCTCTGGCGAATGA 1983 0.4216 MSTTNEDFQGVSNCYVFKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLAGFFNRKAAEQSAAEVALMELAKTGEVNQSITQPVHETGLCKNLLQEYAQKMNYAMPLYQSKKDDTPPGRAPLYSCTVDIGGMLYIGGTAKTKREAEIKAARTALLAIQTNASQASENQFGHLTVIPSRKRATESIADEASKAPKSKKSRFKGKYSKKKPHRNKKRRINADNAGDEAKIDNGAESLASANDESGLQEIKSEAAFPSEVMKNSENGVSSNHHEKETLAGLQEIKSEAAFPSEAMQYYDNGVSTNHHEKETLAGLQEVKSEAAFPSEAMKNSENGASTNYHEKETSAGLQEVKSEAAFPPDEAMQNSENGVPTNHHEKETLGAIKEVKSEAAFPSDEAMQNSENGASTNHHEKETLAAIQEVKSEAAFPSDEAMQNSENGVSTNHHEKETLATIQEIKSEAAFPSDETMMNSENGVSTNHHEKETLAAIQEIKSEAAFPSDEATMNSENGVSTNHHEKETLAAIQEIKSEAAFLSEAMTNSENRVSTNHHEEEKLAGVQEIKSEAAFLSEVMKNSGSDISTNLHEKEMYQSFVLNNQENFESGKLTELQSKEINIGNVVTEVSFAPEGYILAMSVEMNKQNCNGDMVSGE* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3559 660 CDD DSRM_AtDRB-like_rpt1 16 84 IPR044450 GO:0003725
Mtr3g3559 660 MobiDBLite consensus disorder prediction 196 241 - -
Mtr3g3559 660 Gene3D - 17 98 - -
Mtr3g3559 660 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 16 85 IPR014720 -
Mtr3g3559 660 Gene3D - 99 172 - -
Mtr3g3559 660 MobiDBLite consensus disorder prediction 340 355 - -
Mtr3g3559 660 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 102 172 IPR014720 -
Mtr3g3559 660 SUPERFAMILY dsRNA-binding domain-like 104 171 - -
Mtr3g3559 660 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 1 1 314 IPR031147 GO:0003725
Mtr3g3559 660 Coils Coil 534 554 - -
Mtr3g3559 660 SMART DRBM_3 17 84 IPR014720 -
Mtr3g3559 660 SMART DRBM_3 103 171 IPR014720 -
Mtr3g3559 660 MobiDBLite consensus disorder prediction 334 357 - -
Mtr3g3559 660 Pfam Double-stranded RNA binding motif 18 82 IPR014720 -
Mtr3g3559 660 Pfam Double-stranded RNA binding motif 104 168 IPR014720 -
Mtr3g3559 660 MobiDBLite consensus disorder prediction 209 228 - -
Mtr3g3559 660 PANTHER RIBONUCLEASE III 1 314 IPR011907 GO:0003723|GO:0004525|GO:0006364
Mtr3g3559 660 SUPERFAMILY dsRNA-binding domain-like 16 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3559 Mtr-Chr3 49450388 49454445 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3559 - - mtr:MTR_3g100120 1275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3559 3 49450388 49454445 Mtr3g3559 3 49450388 49454445 ECH