Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3558 ATGCACGGTCGACCTCGTAAACCGTTGAAGGAAGAAGATGAATCAGTTTTATCAGCCAAAGCTGAAAAGCTTCATTCACTTCAATCTCAATTCCTTGCTAATCACCAAAATCGCATTTATACCAAAGAAGCTTTAGATTTGAGCGCGAAGCTTCTAGAAATTAATCCAGAATGTTACACAGCTTGGAATTACAGGAAACTCGCCGTTCAACACAATCTCTCTGAATCCAATTCCGATTCTGATGCATCTCTCTTTGATCAGGAGCTCAAAGTGGTGGAGAATGCGTTGAAAAAGAATTTCAAGTCATATGGTGCATGGCATCATAGAAAATGGGTGCTTAGCAAAGGGCATTCATCCATAGATAATGAATTGCGCCTTCTGAATGATTTTCAGAAGGCTGATGCACGGAATTTTCACGCTTGGAATTACCGAAGATTTGTTACTGCACTAATGAAAATATCTGATGAGGATGAGTTGAAATACACAGAGAAAGTGATAGGGGTTAATTTTAGTAATTACTCTGCGTGGCATAATAGGAGCGTGCTTTTATCTACTTTATTTAAAAGAAAGGCCGAAGGATTTTCCCATAAAGAAAAGGTTTTGCAAGAGGAGTATAAGTATGTCCACAGTGCTATTTTTACTGATTCAGATGATCAGAGTGGTTGGTTTTATCATCTTTGGCTTATTGATCAAACCGTGAAAAATGATGCTCCTCTGCTCGTTTCATCTTGGCCATCTCATGGAGCTAATATAACACTGAATGGAAACAACTCCCTACATGGTTCTGGTTTGTCTCTGTTGAATAGTACATTATCAGACACAAAAACACTTCCAGTAATTCTATGTTTCAATCAAGCTGTTGAAGGTGTCAACTCGTCTACAGTGGTTGTTAAATCTGAGCTCTTGAAGGAAGATCTTGTTTGGAAACCACTTTCTACAAATAACTCAAGTACTGCTCAAGTTTGGGTTGTGTACCTAAACATGGGAAATATGAAGCTCCAACTATCAAAAACCTATTCTATAGAGATCAACATTGGACATTCCATGGGTATTTTATCTTCAAATGGATATCATTATGGGGCTCCTTCCCAAATTACTTTTGAAGTGTGTGTGCAGACTGCTTATACAGAACCTGTTGATGGGCAACGTGGAAAGTTGACTTCATGGAAGGACAATGATTTCCGAAAAATTGATCATTTTGAAGAATCAAATCCCGCTGTATCTGCTGATCACCATATTCCAACAACTTCCAATTGGTGCATGGAGGCAATTGATGAAGAAATAACTAATTTTCAAGATTTGTCAGACTGTAAAATTAGAAAGCTTACACTTGCAAGACTTTTGATCGCTCTTGATTTGTTATCACCCCAACATGATAAAAGAAAAAATCATACCGAAGAAGTTCTCAAGCTTTACACCGAGCTGATGAAGTTGGATCCAACACATTCTCTATACTACAAGGATGAGCACAGTCTGCTATTACTTCAGCAGATAACTTCATCTAGAGAGTCTTTAATACCATATTGCCACTACTATAAAGACGCATCAGAAACAAATACTAGTTATGTGTGTCTACGGTTACAAAATCTATCGTTGTCACGGATGGGTTCCTTTGAGAATTTACTGTGGGTGCAAATGCTAGACCTTAGCCACAATGAACTTCGATCAATTGAAGGATTGGAGGCCATGCAACTTCTATCTTGTTTAAATCTGAGTCATAATAAATTTGGTAGTTTCACTGCCTTGGGGCCTCTCAGATTGCTCAAGTCACTTAAAGTGTTGAATATCTCTTGCAATGAGCTAGGATCTCACTCAATTGACACGCGAAGATACCTATGCTCTTCTCCTTTAGCACACAGTGAAGTGTTTGCCTGGGACCGTTTTGAAATCCTTTGTGGCAGTTATAGTGCCACAAAGTTTTGGGAAGCTTTCTTGATATTTGAAAGCTTGAACTTGACTGATTTGAACATAGCAGGAAATGCAGTTGCTGATGAGAACTTCGCATCATTTATCGTTAAAGTTTTGCCTACATTGAAGTTGCTAAATGATGAAGAGTTATAA 2061 0.3828 MHGRPRKPLKEEDESVLSAKAEKLHSLQSQFLANHQNRIYTKEALDLSAKLLEINPECYTAWNYRKLAVQHNLSESNSDSDASLFDQELKVVENALKKNFKSYGAWHHRKWVLSKGHSSIDNELRLLNDFQKADARNFHAWNYRRFVTALMKISDEDELKYTEKVIGVNFSNYSAWHNRSVLLSTLFKRKAEGFSHKEKVLQEEYKYVHSAIFTDSDDQSGWFYHLWLIDQTVKNDAPLLVSSWPSHGANITLNGNNSLHGSGLSLLNSTLSDTKTLPVILCFNQAVEGVNSSTVVVKSELLKEDLVWKPLSTNNSSTAQVWVVYLNMGNMKLQLSKTYSIEINIGHSMGILSSNGYHYGAPSQITFEVCVQTAYTEPVDGQRGKLTSWKDNDFRKIDHFEESNPAVSADHHIPTTSNWCMEAIDEEITNFQDLSDCKIRKLTLARLLIALDLLSPQHDKRKNHTEEVLKLYTELMKLDPTHSLYYKDEHSLLLLQQITSSRESLIPYCHYYKDASETNTSYVCLRLQNLSLSRMGSFENLLWVQMLDLSHNELRSIEGLEAMQLLSCLNLSHNKFGSFTALGPLRLLKSLKVLNISCNELGSHSIDTRRYLCSSPLAHSEVFAWDRFEILCGSYSATKFWEAFLIFESLNLTDLNIAGNAVADENFASFIVKVLPTLKLLNDEEL* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3558 686 Pfam Protein prenyltransferase alpha subunit repeat 121 148 IPR002088 GO:0008318|GO:0018342
Mtr3g3558 686 Pfam Protein prenyltransferase alpha subunit repeat 42 71 IPR002088 GO:0008318|GO:0018342
Mtr3g3558 686 Pfam Protein prenyltransferase alpha subunit repeat 201 231 IPR002088 GO:0008318|GO:0018342
Mtr3g3558 686 Pfam Protein prenyltransferase alpha subunit repeat 156 185 IPR002088 GO:0008318|GO:0018342
Mtr3g3558 686 Pfam Protein prenyltransferase alpha subunit repeat 86 114 IPR002088 GO:0008318|GO:0018342
Mtr3g3558 686 Gene3D Protein prenylyltransferase 1 247 - -
Mtr3g3558 686 ProSiteProfiles Leucine-rich repeat profile. 543 564 IPR001611 GO:0005515
Mtr3g3558 686 SUPERFAMILY L domain-like 519 602 - -
Mtr3g3558 686 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 84 118 IPR002088 GO:0008318|GO:0018342
Mtr3g3558 686 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 40 74 IPR002088 GO:0008318|GO:0018342
Mtr3g3558 686 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 200 234 IPR002088 GO:0008318|GO:0018342
Mtr3g3558 686 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 1 596 - -
Mtr3g3558 686 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 119 153 IPR002088 GO:0008318|GO:0018342
Mtr3g3558 686 SUPERFAMILY Protein prenylyltransferase 17 492 - -
Mtr3g3558 686 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 154 188 IPR002088 GO:0008318|GO:0018342
Mtr3g3558 686 PANTHER - 1 596 - -
Mtr3g3558 686 Gene3D Ribonuclease Inhibitor 512 686 IPR032675 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3558 K14050 - gmx:100807900 1079.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3558 3 49442933 49447690 Mtr3g3558 3 49442933 49447690 ECH