Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3501 ATGGAGGAACCACCGTGTTCATCATCATCGCGATCGAGCTCCAAAGGAAAATCCTCAATCGATCCCATCACCGGCATCAACGTCCTCAGCGACGATCTTCTCCTCAACATTTTCACCAGACTTCCTGCCATATCCTTCGCTTCTGCAACTTGCGTTAACAAATCATGGAATTCCGTTTGTAATCGCATCATTTCTCGTCCAAAACTAGCTTCTGCACTTTCTCTCAATCCTTCACTCCGCGATGCGGTGAATGAAGTTGTTGATAAGGTTTTGTCTGAGCCAATTCGACCTTATTTTGCTATTGTCAATATTGGATGTGGATTTGATCCGAGCAAGATTCTGAGGCTTGTTAAGCGGAGAGTGGGGTTCAATATTCCGGTGGTTGTTACGGTGAATAATGGTATTATTGGAAGGGATGCTGTTACTGATGAATTTAAAGAGGTGAAATGGGGTGCTCTTTTTAGTGGCATTGACGATGAAGAATATGCGAGACATATAAATGAAGGCATAGTTTTGACAATTGGCTGTTTGCCAGGATTGAAAGTTGAAGCTATACCGTTAATACGACCAGCAAAGACACCTCAAGAACCATGCGTTGATAGTTTTTCAATGGATATCAAGGAATACTCAGCCTCTGTCTCTGGTCACCAATTCCCTGTTGGGATTATATTATTTGGAGAAGCAAGCAGTGACATGAAACTGGTCATGGAGAAGTTGGATTATGCCATGCCTATGGACACAGTCGTTGTGGGCGATGAAAGAGGATGCTCTGTATTCAGATGTGGAAATGATTCTAGACACGCCTGTGGTAGTAAAGGGTGCATAGAAGCTGTTGCTCTTGTCTTTGCTCAGGACAGAAACAGGTCTTCTGGAAATATTAGATTTCATGTTGCCTTCTCAAATGGTGTTTCACCTGTTGGTGGCAGATACAAGGCAGCTTCAGTTAGAACAAACAAATCCGATTGTTCAACATGGCTAACTGCCAAAAGGGAAGGGCATCAGCAACCTCTTGATGGTCAAACTATTCTTCATGATATTAACACTTTGCTGGAGAATCACATTGAGCCTCCTGAGTTGTACATTGGGGTGACTAAGCATAGGAAAGTCTCCATTGGAGCAGAGAAGCCAATGCCAAGAACTTGTATTGCATATCATGGCGTTGTGGGAGGTGATGAAGAGTATCTATATGTTGATGGAATGGGCATCAAAACAGGAGATATCTTTCAGTTCTACCATTCAGATCCTAATGTTGCATTAGCTTCATTAACTGAAGTTCGTGGTTCCTTTAAAAAATTTAAGTTGGGGAGGAATTCCAGGAGTTCGGAGAATGATGGAGACAATGCTATCAATGTTTTCGGTGGTATTGTTTTTGCTTGTTATGGCCGCGGCGAATCATTTTTTGGGCGTCTTAATGCTGATAGCTCCCCCTTCTTGGAGAATTTTCCAGGAGTGCCATTGGCTGGAATGTTTTGTGGTGGAGAAATGGTGCGTCCTTGTACCACTATGATTGGTCTATGTCCAGATGCAAAGCCCATCAGTTGCTTTTTGCATGTTTATAGCAGTGTCTATTTACTGATGTCATATGATCCTCCCTCTGTGGATCATTAG 1608 0.4279 MEEPPCSSSSRSSSKGKSSIDPITGINVLSDDLLLNIFTRLPAISFASATCVNKSWNSVCNRIISRPKLASALSLNPSLRDAVNEVVDKVLSEPIRPYFAIVNIGCGFDPSKILRLVKRRVGFNIPVVVTVNNGIIGRDAVTDEFKEVKWGALFSGIDDEEYARHINEGIVLTIGCLPGLKVEAIPLIRPAKTPQEPCVDSFSMDIKEYSASVSGHQFPVGIILFGEASSDMKLVMEKLDYAMPMDTVVVGDERGCSVFRCGNDSRHACGSKGCIEAVALVFAQDRNRSSGNIRFHVAFSNGVSPVGGRYKAASVRTNKSDCSTWLTAKREGHQQPLDGQTILHDINTLLENHIEPPELYIGVTKHRKVSIGAEKPMPRTCIAYHGVVGGDEEYLYVDGMGIKTGDIFQFYHSDPNVALASLTEVRGSFKKFKLGRNSRSSENDGDNAINVFGGIVFACYGRGESFFGRLNADSSPFLENFPGVPLAGMFCGGEMVRPCTTMIGLCPDAKPISCFLHVYSSVYLLMSYDPPSVDH* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3501 535 SMART FIST_C_2 342 498 IPR019494 -
Mtr3g3501 535 SUPERFAMILY F-box domain 21 61 IPR036047 GO:0005515
Mtr3g3501 535 Pfam FIST C domain 401 496 IPR019494 -
Mtr3g3501 535 PANTHER F-BOX ONLY PROTEIN 22 25 534 - -
Mtr3g3501 535 Pfam FIST N domain 109 318 IPR013702 -
Mtr3g3501 535 PANTHER SKP2-LIKE, FIST C DOMAIN, FIST DOMAIN, N-TERMINAL ISOFORM 1 25 534 - -
Mtr3g3501 535 Pfam F-box domain 29 65 IPR001810 GO:0005515
Mtr3g3501 535 Gene3D - 23 69 - -
Mtr3g3501 535 SMART fbox_2 29 69 IPR001810 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3501 - - gmx:100815778 781.941