Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3494 ATGGAAGGCTCAAAAGACCCAATTTCAGATTCAGAACTCGAACTCTACACCATCCCAAGCTCTTCAAAATGGTTCGCGTGGGACGAAATTCACGAAACAGAGAAAACCGCATTCAAAGAGTATTTCGACGGAACTTCAATAACACGAACACCGAAAATCTACAAAGAATATAGAGACTTCATCATCAACAAATATCGTGAAGAACCTTCTAGAAGGTTAACATTCACCGAGGTACGAAAATCACTCGTCGGTGACGTCACTTTCTTGAACAAGGTTTTCCTTTTCTTGGAGTGTTGGGGTTTGATTAACTACGGTGCGCCTTCTGCTGGTAACGATGGGGAAGCGGAGAAGGAACATGAAAAGGAGAGGTGTAAGTTGAAGGTTGAGGAAGGTGCTCCTAATGGGATTCGTGTTGTTGCTACACCGAATTCGTTGAAGCCGATTTCATTGCCGCGGGATACGAAGATTGCTGCTGGTGGTGGTGATGAGAGTGGGGCTGGTGTTAAAATTGCGCCGCTGGCGTCATATTCAGATGTTTATGGTGATTTGATTCGACGTAAAGAGGTCAATTGTGGGAATTGTGGTGATAAATGTGGCTCTGGACATTACCGAAGTACCAAGGATAATTTCATTATTTGCACGAAATGTTTCAAAAACGGAAATTATGGGGAGAAAAGGTCCATGGAGGATTTCAAATTAAACGAGTCAAGTGAAATTAGTGCCAACCACAGTGCTGTCTGGACTGAGGGAGAAACTCTTCTTCTTTTAGAATCTGTTTTGAAGCATGGGGATGACTGGGAACTTGTTGCTCAAAGTGTTCGAACCAAGACTAAACTTGAATGTATTTCAAAACTCATTGAGCTGCCCTTTGGGGAGCTCATGTTAGCCTCTGTTCGCCGAAATGATAACAGTAATAGTGTTACTGGCATTGTGAACAACAGAAACCAAGTTCAGGTATCTTCATCCGATCACCAAGAAACTTCAATGACACAGGATCAATCTTCTGAGCCTAAAAATGAAGTTGAGCAGAATGGAGATGCTGTGAATGAAAATCCTTCAAAAAGGCGGCGGGTCTCCACACTTTCAGATTCCAGCAGTTCACTAATGAAGCAGGTGGGTCTGCTCTCAACTGTGGTTGACCCTCATGTCACAGCTGCTGCAGCTAGTGCTGCTATTACAGCACTTTGTGATGAGAATTCGCTCCCAAGGGACATATTTGATGTTGAAGAGGATAATGCTTCAGCAAGGGCTCTCGAGGCTGAAGGTTTAGAGATGGTGGAGGGGTCCACTCAATCAGAAGTAAAAGATGACATACCATTGACACTACGTATAAGAGCTGCCATTGGAACGGCTCTTGGGGCTACTGCTGCACGAGCAAAGTTGTTGGCGGACCAAGAAGATAGAGAGATTGAACATTTAGTAGCAACTATAATTGAAGCTCAGGTTGAGAAGTTGCAACAGAAGGTTAAACATTTTGATGAACTGGAGCTTTTGATGGAGAAGGAACACGCTGAAATGGAAGAGCTGAAAGATTCTATCTTAACTGAACGGATTGATGTGTTGCGGAAGACATTTAAATCTGGTGTCGCTAGATGGAAGCATTATCCTTCTCTAAAATCTTAG 1623 0.4331 MEGSKDPISDSELELYTIPSSSKWFAWDEIHETEKTAFKEYFDGTSITRTPKIYKEYRDFIINKYREEPSRRLTFTEVRKSLVGDVTFLNKVFLFLECWGLINYGAPSAGNDGEAEKEHEKERCKLKVEEGAPNGIRVVATPNSLKPISLPRDTKIAAGGGDESGAGVKIAPLASYSDVYGDLIRRKEVNCGNCGDKCGSGHYRSTKDNFIICTKCFKNGNYGEKRSMEDFKLNESSEISANHSAVWTEGETLLLLESVLKHGDDWELVAQSVRTKTKLECISKLIELPFGELMLASVRRNDNSNSVTGIVNNRNQVQVSSSDHQETSMTQDQSSEPKNEVEQNGDAVNENPSKRRRVSTLSDSSSSLMKQVGLLSTVVDPHVTAAAASAAITALCDENSLPRDIFDVEEDNASARALEAEGLEMVEGSTQSEVKDDIPLTLRIRAAIGTALGATAARAKLLADQEDREIEHLVATIIEAQVEKLQQKVKHFDELELLMEKEHAEMEELKDSILTERIDVLRKTFKSGVARWKHYPSLKS* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3494 540 ProSiteProfiles SANT domain profile. 242 293 IPR017884 -
Mtr3g3494 540 Pfam SWIRM domain 19 104 IPR007526 GO:0005515
Mtr3g3494 540 SMART sant 243 291 IPR001005 -
Mtr3g3494 540 Coils Coil 492 512 - -
Mtr3g3494 540 Gene3D - 243 291 - -
Mtr3g3494 540 Pfam SWIRM-associated region 1 450 526 IPR032451 -
Mtr3g3494 540 MobiDBLite consensus disorder prediction 306 364 - -
Mtr3g3494 540 ProSiteProfiles Myb-like domain profile. 247 281 IPR001005 -
Mtr3g3494 540 ProSiteProfiles SWIRM domain profile. 16 113 IPR007526 GO:0005515
Mtr3g3494 540 PANTHER BRAHMA ASSOCIATED PROTEIN 155 KDA 10 531 - -
Mtr3g3494 540 Pfam Myb-like DNA-binding domain 247 285 IPR001005 -
Mtr3g3494 540 Gene3D - 22 108 IPR036388 -
Mtr3g3494 540 PANTHER SWI/SNF COMPLEX-RELATED 10 531 - -
Mtr3g3494 540 CDD SANT 247 284 IPR001005 -
Mtr3g3494 540 SUPERFAMILY Homeodomain-like 244 295 IPR009057 -
Mtr3g3494 540 MobiDBLite consensus disorder prediction 306 348 - -
Mtr3g3494 540 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3494 Mtr-Chr3 48823412 48829254 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3494 K11649 - gmx:100800135 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3494 3 48823412 48829254 Mtr3g3494 3 48823412 48829254 ECH