Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3407 ATGTTCATGGCTACACAAAATTGTTCAAAATGTGTCATGTTGGTAACACTACTAGTAACAATTCTCTTTGTTCATCCAACATTCTCAACATCAAGAGGGTCTCTCAACCATCACCAAATCTCTCAAGGCGGGTTCCGAATCACTCTTCGCCACGTTGATTCCGGCAAAAACTTGACTAAACTCGAGCGCGTTCAACATGGCATTAACCGGGGACATAGCCGACTTCAAAGACTAAATGCAATGGTGTTAGCATCATCCACAACTGAAGATTCATCTCAAGTGGAAGCACCGGTTCACGCCGGAAACGGTGAGTATCTAATGGAACTATCCATTGGAACACCACCAATTTCTTACCCAGCAGTTTTGGATACAGGAAGTGACCTCATATGGACTCAATGTGAACCTTGTTCACAATGTTACAAACAACCAACACCAATTTTTGATCCAAAAAAATCCTCAACCTTTTCTAAACTCTCATGTAGTAGCAACCTATGCAATGCTTTACCTTCTCCAACTTGCAGCAACAATGGTTGCAATTATGTTTATTCATATGGTGATTATTCTATGACACAAGGTATTTTAGGTAGTGAAACATTCACTTTTGGTGATGATAAAAAAAACCAAGTTTCAGTTAAAAACATTGGTTTTGGTTGTGGTGAAGACAATGAAGGAAAAGGGTTTGAACAAGCTTCAGGGTTGGTTGGATTAGGACGTGGTCCTTTATCTTTGGTTTCTCAATTACAAGAACAAGAATTCTCTTATTGTTTAACCTCAATGGATGACACAAAACAAAGTGTTCTTTTGTTAGGTTCTCTTCCAAATGTTAATGCCACAAAACAGGTAACAACACCACTTATCACAAATCCATTGCAACCATCTTTTTATTATATTTCACTTGAAGGTATCTCTGTTGGTGACACAAAATTGTCAATTGAGCAATCAACTTTTGAGGTTAGTGATGATGGAAGTGGTGGTGTAATTATTGATTCTGGCACAACAATTACTTACATTGAAGAGAATGCTTTTGATTCATTGAAGAAAGAGTTTACATCTCAAACAAAATTACCGGTCGATAAATCGGGTTCAACTGGATTAGATGTTTGTTTTAGTTTGCCATCAGGGAAAACAGAAGTTGAAATTCCAAAATTAGTTTTTCATTTCAAAGGTGGTGATTTGGAATTGCCTGGTGAAAATTATATGATTGCTGATTCAAGTTTAGGTGTTGCTTGTTTAGCTATGGGAGCTTCTAATGGAATGTCTATCTTTGGTAATATTCAACAACAAAATATTTTGGTTAATCATGATCTTCAGAAGGAAACTATTACTTTTATTCCTACTCAATGTAATAAGTTGTGA 1356 0.3658 MFMATQNCSKCVMLVTLLVTILFVHPTFSTSRGSLNHHQISQGGFRITLRHVDSGKNLTKLERVQHGINRGHSRLQRLNAMVLASSTTEDSSQVEAPVHAGNGEYLMELSIGTPPISYPAVLDTGSDLIWTQCEPCSQCYKQPTPIFDPKKSSTFSKLSCSSNLCNALPSPTCSNNGCNYVYSYGDYSMTQGILGSETFTFGDDKKNQVSVKNIGFGCGEDNEGKGFEQASGLVGLGRGPLSLVSQLQEQEFSYCLTSMDDTKQSVLLLGSLPNVNATKQVTTPLITNPLQPSFYYISLEGISVGDTKLSIEQSTFEVSDDGSGGVIIDSGTTITYIEENAFDSLKKEFTSQTKLPVDKSGSTGLDVCFSLPSGKTEVEIPKLVFHFKGGDLELPGENYMIADSSLGVACLAMGASNGMSIFGNIQQQNILVNHDLQKETITFIPTQCNKL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3407 451 CDD pepsin_A_like_plant 104 448 IPR034161 -
Mtr3g3407 451 Pfam Xylanase inhibitor N-terminal 105 271 IPR032861 -
Mtr3g3407 451 SUPERFAMILY Acid proteases 98 448 IPR021109 -
Mtr3g3407 451 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 326 337 IPR001969 GO:0004190|GO:0006508
Mtr3g3407 451 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 120 131 IPR001969 GO:0004190|GO:0006508
Mtr3g3407 451 Pfam Xylanase inhibitor C-terminal 295 443 IPR032799 -
Mtr3g3407 451 Gene3D Acid Proteases 82 269 IPR021109 -
Mtr3g3407 451 ProSiteProfiles Peptidase family A1 domain profile. 105 444 IPR033121 -
Mtr3g3407 451 PANTHER OS07G0603500 PROTEIN-RELATED 17 450 - -
Mtr3g3407 451 PANTHER OS08G0469000 PROTEIN 17 450 - -
Mtr3g3407 451 PRINTS Pepsin (A1) aspartic protease family signature 111 131 IPR001461 GO:0004190|GO:0006508
Mtr3g3407 451 PRINTS Pepsin (A1) aspartic protease family signature 326 337 IPR001461 GO:0004190|GO:0006508
Mtr3g3407 451 Gene3D Acid Proteases 270 451 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3407 Mtr-Chr3 47976367 47978349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3407 91 451 Miscellaneous Gene Families AT1G77480 30.175 4.54e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3407 - - gmx:100811294 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3407 3 47976367 47978349 Mtr3g3407 3 47976367 47978349 ECH