Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3404 ATGTGGCACCGTTTATCATCATCATCATCCAAACTCAACCTCAGAACTTGTGCTTCAGGGTTAGGGTTTCTTACACGATCATTCTCCTCTGAACCGGGAAAGAGATTCGCTGCGTTATGGGGCAACGGTGATTACGGTAGATTGGGTCTCGGTAATTTGAATTCTCAATGGAAACCTGCTATTTGCACCTCCTTCCATAATCAAAACGTTCAAGCAATTGCTTGTGGTGGCGCTCACACGCTATTTTTAACAGACAATGGATGTGTTTATGCTACTGGTCTCAATGATTTTGGACAGCTCGGTACATCGGAGAGTAAACCCTACTCAGTTGTGCCACTTCAAGTTTTTGGGCACGAGAAGAAAGTTGTACGGATCTCTGCTGGTTATAATCATTCCAGTGCAATAACAGTGGATGGAGAACTGTACATGTGGGGAAAGAATACAACTGGGCAGCTTGGACTTGGAAAAAAGGCTCCCAACATAGTTCCTTTGCCAACTAAAGTAGAATACTTGGATGGAATCACCATTGAAATGGCTGCTCTGGGTTCTGAGCACTCACTGGCTATTAGTGATGGAGGAGAGGCCTATAGTTGGGGAGCAGGAGCGTCTGGTAGACTTGGTCATGGTCATGAGTCAAGCATACTAGGATTCTTCAAAAGTTACAGTGAATACAGCCCAAGGCTTATAAAGGATCTTGAAGGAATCAAGGTAAAATATGTAGCTGCTGGGATGCTGACCTCTGCTTGTACTGATGAAAATGGATCTGTGTTTATATTTGGAGATAAAGGGATTGACAAATTGCTCTTGAAGGGGACGAGCAATACAACAAAACCATCGTTGATCAGTGAACTTCCATACGCTGAAGAAGTTGCTTGTGGTGGCTATCATACCTGTGTCTTGACAAATTTTGGTGAACTTTATACTTGGGGTTCAAATGAAAATGGCTGCCTTGGCATAGGGTCCTCATATGCCATTCATCTACCTGAAAAGGTTCAAGGGCCATTCTTGGAGTCTTCTGTTGTTCAGGTTTCTTGTGGCTGGAAACATACAGCTGCCATTTCTGGGGGAAGAATCTTCACATGGGGTTGGGGAGGTTCAAATGGAACTTTTTCTGACGATGGACATTCTTCAGGTGGACAATTGGGTCATGGAAGTGATGTGGATTACATAAACCCTTCAAGAGTTTGCTTTGCAGAAGACGTGAAAGCATTGCAAGTTTCATGTGGTTTCAATCATACAGGTGCTATATTTGAGTATGCATAG 1263 0.4347 MWHRLSSSSSKLNLRTCASGLGFLTRSFSSEPGKRFAALWGNGDYGRLGLGNLNSQWKPAICTSFHNQNVQAIACGGAHTLFLTDNGCVYATGLNDFGQLGTSESKPYSVVPLQVFGHEKKVVRISAGYNHSSAITVDGELYMWGKNTTGQLGLGKKAPNIVPLPTKVEYLDGITIEMAALGSEHSLAISDGGEAYSWGAGASGRLGHGHESSILGFFKSYSEYSPRLIKDLEGIKVKYVAAGMLTSACTDENGSVFIFGDKGIDKLLLKGTSNTTKPSLISELPYAEEVACGGYHTCVLTNFGELYTWGSNENGCLGIGSSYAIHLPEKVQGPFLESSVVQVSCGWKHTAAISGGRIFTWGWGGSNGTFSDDGHSSGGQLGHGSDVDYINPSRVCFAEDVKALQVSCGFNHTGAIFEYA* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3404 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 87 138 IPR000408 -
Mtr3g3404 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 35 86 IPR000408 -
Mtr3g3404 420 PRINTS Chromosome condensation regulator RCC1 signature 36 52 IPR000408 -
Mtr3g3404 420 PRINTS Chromosome condensation regulator RCC1 signature 70 83 IPR000408 -
Mtr3g3404 420 PRINTS Chromosome condensation regulator RCC1 signature 89 105 IPR000408 -
Mtr3g3404 420 PRINTS Chromosome condensation regulator RCC1 signature 139 155 IPR000408 -
Mtr3g3404 420 PRINTS Chromosome condensation regulator RCC1 signature 179 195 IPR000408 -
Mtr3g3404 420 PRINTS Chromosome condensation regulator RCC1 signature 195 209 IPR000408 -
Mtr3g3404 420 PRINTS Chromosome condensation regulator RCC1 signature 293 311 IPR000408 -
Mtr3g3404 420 PRINTS Chromosome condensation regulator RCC1 signature 351 372 IPR000408 -
Mtr3g3404 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 303 IPR000408 -
Mtr3g3404 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 356 419 IPR000408 -
Mtr3g3404 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 193 253 IPR000408 -
Mtr3g3404 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 304 356 IPR000408 -
Mtr3g3404 420 Gene3D - 162 419 IPR009091 -
Mtr3g3404 420 Gene3D - 23 161 IPR009091 -
Mtr3g3404 420 PANTHER OS11G0545800 PROTEIN 33 420 - -
Mtr3g3404 420 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 33 420 - -
Mtr3g3404 420 Pfam Regulator of chromosome condensation (RCC1) repeat 193 243 IPR000408 -
Mtr3g3404 420 Pfam Regulator of chromosome condensation (RCC1) repeat 86 135 IPR000408 -
Mtr3g3404 420 Pfam Regulator of chromosome condensation (RCC1) repeat 138 189 IPR000408 -
Mtr3g3404 420 Pfam Regulator of chromosome condensation (RCC1) repeat 40 83 IPR000408 -
Mtr3g3404 420 Pfam Regulator of chromosome condensation (RCC1) repeat 374 416 IPR000408 -
Mtr3g3404 420 Pfam Regulator of chromosome condensation (RCC1) repeat 304 353 IPR000408 -
Mtr3g3404 420 SUPERFAMILY RCC1/BLIP-II 39 337 IPR009091 -
Mtr3g3404 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 139 192 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3404 Mtr-Chr3 47909980 47920210 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3404 - - gmx:100811823 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3404 3 47909980 47920210 Mtr3g3404 3 47909980 47920210 ECH