Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3375 ATGGGTGGACGCGCCATAACCGTCCTAAACGTGGCAGAGAAGCCGTCGGTGGCGAAATCGGTGGCGAGCATACTCTCTCGCAACCAAGGCCTTCGAGTAAGGGACGGTCGTTCTCGCTACAACAGAATCTTCGAATTCAACTACACCATTCGAGGTCAACCCTGTCAAATGCTCTTCACCTCCGTCCTCGGTCACCTCATGGAGCTTGACTTCGACGATCGTTACCGGAAATGGCACTCGTGTGATCCCGCCGATCTCTTCCAGGCTCCGGTTCATAAATTCGTTCCCGAGGATAAAAAGGATATCAAGAGGACATTAGAGGAAGAAGCTAGGCGGTGTCAGTGGCTTATTTTGTGGCTTGATTGCGATAGGGAAGGTGAGAATATCGCGTTTGAAGTTATCAATGTGTGTACTGCGGCAAATCCGAATCTTACTATTAAGAGAGCTCGATTTTCTGCATTGATTGACAGGGAAATCCATCAGGCTGTGCAAAATCTTGTCGAGCCTAATAAGTGGTTTGCTGATGCCGTAGATGCTAGGCAGGAAATAGATCTCCGTATAGGTGCCACTTTCACCAGATTTCAGACCATGTTAATGAAAGATGCTTTTGTCATAGACACTGTTACAGATGGCAGAAATACTGTCTTGAGTTATGGGCCTTGCCAGTTCCCTACGCTTGGATTTGTTGTGGAAAGATACTGGGAGATACAAGCACATGAACCGGAAGAGTTTTGGTTAATCAAATGTTCTCATAGATCAGATGAAGGCGTTGCTAATTTCAGCTGGGAGCGGGGACATTTGTTTGATTATACATGTGCTGTCATAATATATGAGATGTGCATCGAGGAACCAACTGCAACCGTGACAAAAGTAACACCAAAGGAGAAGCCAAAGTATCCTCCCCATCCCCTGAGTACTATTGAGCTTGAGAAACGGGCCTCACGATACTTCCGTATGAGCTCTGAGCGCACAATGAAGGTGGCAGAAGAACTTTACCAAGGTGGTTTCATCAGTTATCCTCGTACAGAAACTGATAACTTTTCTTCAAGGACCGATTTGCATGCAATTGTGCAAGAACAACAAGGGCATCCTGAGTGGGGAATATATGCACAACGGTTGCTGGACCCTGGGGCGGGACTTTGGAGAAACCCTAGAGGTGGTGGACATGATGACCAGGCTCATCCACCCATCCACCCCACCAAATTTTCTGCTGGAGAATCAGGATGGAGTCAAGACCATCGTAAACTGTATGAGTTGGTTGTTCGCCACTTCCTGGCATGTGTCTCAAAGCCGGCCTTAGGAGCTGAAACCACAGTGGAAATTGACATTGCTGGTGAACGATTTTCGGCATGTGGGAGGGTGATTCTAGAGAGAAACTACTTGGATATCTATATCTATGATAGATGGGATGGATCAATGATTCCGAATTATGCTATCGGTGAACAGTTCATTCCAACAACATTGACCCTTGATCCCGGAAAAACTAATCCACCACCTCTTCTTAGTGAAGCGGATTTGCTGAGCCGTATGGATAAGGAGTGCATTGGTACGGATGCTACGATGCACGATCACATCAAGAAGCTGCTTGATCGATTTTATGCAACTAAGGATGCAAACATGTGTTTCACACCAACTAATCTGGGTGAGGCACTTGTTATGGGATATGATGACATGGGGTATAAACTATGGAAACCAGATCTTAGAGCAGTTATGGAACGAGATATGAAGTCAGTCAGTGAAGGGAATAAAAGCAAAGCTGAAGTTTTGGATACTAGCTTGCAGCAGATGAAAACTTGTTTCTTAGATGCAAGATTAAATAAAGTTAAACTTTTAGAAGCTATGGCAATATTTTTTGAAAGATTAAATAGAGTTGGCAGTGATGAGCAGAATGGAACTGGGGTAGTTGTTCGACGGTGTAGACTTTGCCAAGAATCAGATATGGTGCTAAAGAAAAATCGAGATGGCAATTTTATGGTTGGATGCCGTAGTTACCCTCAGTGTAGAAGTGTTGTCTGGCTCCCTGGATCAATATCAGAAGCGGTTGTGACCACCAATGCTTGCAACAATTGCACTCCTGGTCCTGTTTACCTAATTCAATTCAAGTTTCAGCAGCTGAAAATACCACCAAGCTACAATGTCAACCATTTGGGTTGCATTGGTGGCTGCGATGAGATTCTTACACAGTTGACAGAAATATGTGGTACCGGCTCCCGCATGCCAGCAAGAGGTCGAGGACCTACTGCATCAACCAGCAACGTCCATCATACCAACCCAAGGTCTACTGCATCAACCAGCAACGCCCATCATACCAACCCAAGGCAAGCAGTTTGTTCGCACTGTCAAGAAACAGGGCATTCTTCTAATGACTGTCCTTCACAGACTCGACGCTCCAGGAATCCCCAATATCCTGGAATGAACCAACAAAATGAAGATGGGTGGATGACCTCAACAATGGCAGTGAAGGAAGAAGTTTTCCACGTTCAAATAGTACTCCAGCATCCAACCGTGGTCGAAATGGTGGCCGTGGATCTCGTGGTAGGGGTCGCAATGGATCTAATTCTTCTAATGGGACATTTGTGTCAGCCACTGGTGATCCTATTTCTGATAGAAGGTGCTATACATGCGGTGATCCATCTCACTTTGCTAATGTTTGCCCCAATCGTGGTGGACTCTGATGCCTTAATGATTCTTATCAGTCATATAGAAGGAAAAACTTGGTGTTTTGCATGTTTTTTTTGA 2739 0.4527 MGGRAITVLNVAEKPSVAKSVASILSRNQGLRVRDGRSRYNRIFEFNYTIRGQPCQMLFTSVLGHLMELDFDDRYRKWHSCDPADLFQAPVHKFVPEDKKDIKRTLEEEARRCQWLILWLDCDREGENIAFEVINVCTAANPNLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQEIDLRIGATFTRFQTMLMKDAFVIDTVTDGRNTVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWLIKCSHRSDEGVANFSWERGHLFDYTCAVIIYEMCIEEPTATVTKVTPKEKPKYPPHPLSTIELEKRASRYFRMSSERTMKVAEELYQGGFISYPRTETDNFSSRTDLHAIVQEQQGHPEWGIYAQRLLDPGAGLWRNPRGGGHDDQAHPPIHPTKFSAGESGWSQDHRKLYELVVRHFLACVSKPALGAETTVEIDIAGERFSACGRVILERNYLDIYIYDRWDGSMIPNYAIGEQFIPTTLTLDPGKTNPPPLLSEADLLSRMDKECIGTDATMHDHIKKLLDRFYATKDANMCFTPTNLGEALVMGYDDMGYKLWKPDLRAVMERDMKSVSEGNKSKAEVLDTSLQQMKTCFLDARLNKVKLLEAMAIFFERLNRVGSDEQNGTGVVVRRCRLCQESDMVLKKNRDGNFMVGCRSYPQCRSVVWLPGSISEAVVTTNACNNCTPGPVYLIQFKFQQLKIPPSYNVNHLGCIGGCDEILTQLTEICGTGSRMPARGRGPTASTSNVHHTNPRSTASTSNAHHTNPRQAVCSHCQETGHSSNDCPSQTRRSRNPQYPGMNQQNEDGWMTSTMAVKEEVFHVQIVLQHPTVVEMVAVDLVVGVAMDLILLMGHLCQPLVILFLIEGAIHAVIHLTLLMFAPIVVDSDALMILISHIEGKTWCFACFF* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3375 912 Gene3D - 3 169 - -
Mtr3g3375 912 PRINTS Prokaryotic DNA topoisomerase I signature 116 129 IPR013497 GO:0003677|GO:0003916|GO:0006265
Mtr3g3375 912 PRINTS Prokaryotic DNA topoisomerase I signature 216 234 IPR013497 GO:0003677|GO:0003916|GO:0006265
Mtr3g3375 912 PRINTS Prokaryotic DNA topoisomerase I signature 334 343 IPR013497 GO:0003677|GO:0003916|GO:0006265
Mtr3g3375 912 PRINTS Prokaryotic DNA topoisomerase I signature 416 432 IPR013497 GO:0003677|GO:0003916|GO:0006265
Mtr3g3375 912 PRINTS Prokaryotic DNA topoisomerase I signature 514 528 IPR013497 GO:0003677|GO:0003916|GO:0006265
Mtr3g3375 912 SMART toprim5 7 142 IPR006171 -
Mtr3g3375 912 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 329 343 IPR023406 GO:0003917
Mtr3g3375 912 SUPERFAMILY Retrovirus zinc finger-like domains 760 798 IPR036875 GO:0003676|GO:0008270
Mtr3g3375 912 MobiDBLite consensus disorder prediction 737 811 - -
Mtr3g3375 912 Pfam Topoisomerase DNA binding C4 zinc finger 637 674 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Mtr3g3375 912 CDD TOPRIM_TopoIA_TopoIII 7 166 IPR034144 -
Mtr3g3375 912 Gene3D Topoisomerase I, domain 2 176 600 IPR013824 -
Mtr3g3375 912 SMART topIaneu2 292 552 IPR003602 GO:0003677|GO:0003916|GO:0006265
Mtr3g3375 912 Pfam DNA topoisomerase 170 589 IPR013497 GO:0003677|GO:0003916|GO:0006265
Mtr3g3375 912 ProSiteProfiles Toprim domain profile. 7 152 IPR006171 -
Mtr3g3375 912 Gene3D - 768 802 - -
Mtr3g3375 912 PANTHER PROKARYOTIC DNA TOPOISOMERASE 7 700 IPR000380 GO:0003677|GO:0003917|GO:0006265
Mtr3g3375 912 SMART topIban2 145 246 IPR003601 GO:0003677|GO:0003916|GO:0006265
Mtr3g3375 912 SUPERFAMILY Prokaryotic type I DNA topoisomerase 8 599 IPR023405 -
Mtr3g3375 912 SMART c2hcfinal6 776 792 IPR001878 GO:0003676|GO:0008270
Mtr3g3375 912 PANTHER DNA TOPOISOMERASE 3-ALPHA 7 700 - -
Mtr3g3375 912 Gene3D Bacterial Topoisomerase I, domain 1 627 673 - -
Mtr3g3375 912 Gene3D Topoisomerase I, domain 4 300 430 IPR013826 -
Mtr3g3375 912 Gene3D Topoisomerase I, domain 3 240 498 IPR013825 -
Mtr3g3375 912 Pfam Toprim domain 9 153 IPR006171 -
Mtr3g3375 912 MobiDBLite consensus disorder prediction 744 811 - -
Mtr3g3375 912 CDD TOP1Ac 173 600 IPR013497 GO:0003677|GO:0003916|GO:0006265
Mtr3g3375 912 ProSiteProfiles Zinc finger CCHC-type profile. 777 792 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3375 Mtr-Chr3 47653666 47668318 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3375 K03165 - jre:109018851 1321.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3375 3 47653666 47668318 Mtr3g3375 3 47653666 47668318 ECH