Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3359 ATGGAATCAGAGAAAACAACCCTTATGATCCTTGGATCATACACAAAACCATCATGTTCAATCTTGTTTCTCTTCTTCACCTTCCTCACCATCCTCTCTCTTCAATTCTCCACCCGCTCTCTCTTCCCTCTCTCCATCCTCCTCTCCCAACAACCACAACCCTCCCTCGTCGATCCCACCACCTGCTCCGGTTTCTTCAACAACGTTCCTCCCAGAAAAATTATCAAGTCGATCGTTGATTTCGGCGGAGTTGGCGATGGTAAAACCTCTAACACACAATCGTTTCAGAGAGCGATTCGTTACATGCAACGTTTTCGAGGGAAAGGTGGGTCCCAACTTAATATTCCCAATGGAACTTGGCTTACCGGTAGTTTTAATCTCACCAGTGATTTCACACTTTTTCTTCATCATGGTGCTGTTGTTTTAGGTTCTCAGGACATTAAAGAATGGCCTATTATTGAACCATTACCATCTTATGGTAGGGGAAGAGAGAGGTTAGGAGGAAGACATATTAGCCTTATTCATGCAAATGGGGTCCGTAATGTTGTCATTACAGGAGAAAATGGGACAGTGGATGGTCAAGGGAGGATGTGGTGGGAGCTTTGGTGGAATAGAACATTGGTGCACACAAGAGGCCACCTCCTTGAACTCATGAACTCAGAAAATGTTCTTGTTTCAAACCTCACTTTTAGAAATTCTCCTTTTTGGACTATCCATCCTGTTTATTGCAGTAATGTTGTGATCAAAGGGATGACAATCTTGGCTCCTCTTAATGCCCCAAATACTGATGGCATAGACCCAGACTCGAGTACCAACGTGTGTATTGAAGATAACTACATAGAAAGTGGGGACGATCTTGTAGCCATCAAAAGTGGTTGGGATCAATATGGAATCGCCGTGGCTAAGCCTAGCACAAATATCATAGTAAGTAGAGTTTCAGGAACTACCCCAACTTGCTCTGGAGTAGGAATAGGAAGTGAGATGTCTGGTGGAATTTCAAATATTACAATCGAAAATTTGCACGTGTGGAATTCTGCAGCCGGTGTTCGCATAAAATCTGATAATGGTAGAGGCGGGTATATAAAAAATGTGAGTATAAGCAATATAAGAATGGAGAGAGTGAAGATACCAATTAGGTTCAGTAGAGGTTCAAATGATCATCCTGATGATGGGTGGGATCCAAAAGCTGTTCCTAGATTTAAAGATATTTTAATCAGCAATGTGATCAGTGTAAATTCAACCAAAGCTCCAGTTTTGGAAGGTGTAAAGGGTTCGTCATTCGAAGGCTTGTGCTTCAAGAATATTACTTTTCTTGGTGTAGCCTTATCTGCAACATGGCATTGTGAATATGTAGCTGGTTTCACCAATGGGGTGTTCCCCCTTCCGTGTCCTGAGTTGCAGAACAATGGCACTTCATCCTGGTGTTGA 1428 0.4265 MESEKTTLMILGSYTKPSCSILFLFFTFLTILSLQFSTRSLFPLSILLSQQPQPSLVDPTTCSGFFNNVPPRKIIKSIVDFGGVGDGKTSNTQSFQRAIRYMQRFRGKGGSQLNIPNGTWLTGSFNLTSDFTLFLHHGAVVLGSQDIKEWPIIEPLPSYGRGRERLGGRHISLIHANGVRNVVITGENGTVDGQGRMWWELWWNRTLVHTRGHLLELMNSENVLVSNLTFRNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGIAVAKPSTNIIVSRVSGTTPTCSGVGIGSEMSGGISNITIENLHVWNSAAGVRIKSDNGRGGYIKNVSISNIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFKDILISNVISVNSTKAPVLEGVKGSSFEGLCFKNITFLGVALSATWHCEYVAGFTNGVFPLPCPELQNNGTSSWC* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3359 475 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 11 475 - -
Mtr3g3359 475 SUPERFAMILY Pectin lyase-like 70 466 IPR011050 -
Mtr3g3359 475 Pfam Glycosyl hydrolases family 28 172 452 IPR000743 GO:0004650|GO:0005975
Mtr3g3359 475 SMART pbh1 243 269 IPR006626 -
Mtr3g3359 475 SMART pbh1 304 326 IPR006626 -
Mtr3g3359 475 SMART pbh1 361 382 IPR006626 -
Mtr3g3359 475 SMART pbh1 332 353 IPR006626 -
Mtr3g3359 475 SMART pbh1 270 302 IPR006626 -
Mtr3g3359 475 Gene3D - 66 454 IPR012334 -
Mtr3g3359 475 PANTHER PECTIN LYASE-RELATED 11 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3359 Mtr-Chr3 47485867 47489066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3359 1 475 Glycoside Hydrolase AT4G33440 67.715 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3359 - - mtr:MTR_3g096330 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3359 3 47485867 47489066 Mtr3g3359 3 47485867 47489066 ECH