Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3358 ATGTTTTTCTTTAAAGCAATGTACTTAGCAAAGCCAGCAGTGAACTCCAAGACTGTCATAACTTGTATTTCTTGCAACCTCAAAACACTCATCTGCAAAGACCTGTTACATCATTCAACAGTCAAGAAGACCTTACAAAATGGTATATTTACGTATCTTGTATATTGGCAAAAGCTGAGAATCAAGATGAAGATGAAATCCCATTCTTCATTTTTCTTCACGTTCCTCATTGTAGCCTTTAGCAGCATACAAATAAGCTTAGCAGACTGTGATAATCTACATGACACATGCCCCACATCTCCATCAAAAAAGCAGACAACATTCATCAATGGCTTCTCTTGCAATAACCCATCTAACACATTAGCTCATGATTTTAAGACCATGGAATTAAGCAAAGCAGGTTCAAGAGATGATTTTGGTTCATCAATCAACATTGTCTCAGCTTCTAAGTTCCCTGGCCTCAACACTCTTGGTATCTCAATTGGTAGAACAGACATCGAAGTTGATGGGATTGTGAACCTCCATAATCATCCAAGAGCTAGTGAGATGATCTTTGTTAAGGAAGGTGTATTGGATGCTGGATTTCTTGATACACAAAACAAGGTTTTTCAGAAGTCTTTGAAGGAAGGTGATGTGTTTGTGATCCCTAAGGGCTTGTTCCATTTCTTTCTAAATCGTGGTGTAGAAGTTGCAACTGTGTTGTCTGTGTATAATAGCCAAAATCCAGGGTTGGGATCTCTTAATGCCACACCACCTTCTTCTTCTGAATCAGTTGAGAAGATAAAGAGGAAGCTTTATGAGTTAGAACTTGATAATGTTAATGATATGAGTTTGGATGATGTGTCGGAGATTATTTACAGTTAG 864 0.3785 MFFFKAMYLAKPAVNSKTVITCISCNLKTLICKDLLHHSTVKKTLQNGIFTYLVYWQKLRIKMKMKSHSSFFFTFLIVAFSSIQISLADCDNLHDTCPTSPSKKQTTFINGFSCNNPSNTLAHDFKTMELSKAGSRDDFGSSINIVSASKFPGLNTLGISIGRTDIEVDGIVNLHNHPRASEMIFVKEGVLDAGFLDTQNKVFQKSLKEGDVFVIPKGLFHFFLNRGVEVATVLSVYNSQNPGLGSLNATPPSSSESVEKIKRKLYELELDNVNDMSLDDVSEIIYS* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3358 287 PRINTS Germin signature 175 195 IPR001929 GO:0030145
Mtr3g3358 287 PRINTS Germin signature 205 225 IPR001929 GO:0030145
Mtr3g3358 287 PRINTS Germin signature 238 253 IPR001929 GO:0030145
Mtr3g3358 287 ProSitePatterns Germin family signature. 170 183 IPR019780 GO:0030145
Mtr3g3358 287 SMART Cupin_1_3 131 259 IPR006045 -
Mtr3g3358 287 Pfam Cupin 140 255 IPR006045 -
Mtr3g3358 287 SUPERFAMILY RmlC-like cupins 139 243 IPR011051 -
Mtr3g3358 287 CDD cupin_OxOx 89 265 - -
Mtr3g3358 287 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 76 276 - -
Mtr3g3358 287 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 76 276 - -
Mtr3g3358 287 Gene3D Jelly Rolls 88 276 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3358 Mtr-Chr3 47484738 47485863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3358 72 243 Miscellaneous Gene Families AT3G05930 41.379 2.01e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3358 - - mtr:MTR_3g096330 552.747