Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3340 ATGCAGACACGGGTTTTTCTGAATCGCAGCGTGAAGAAGAAGAAAGAATCCAAGTATATCAGAGGTTTCATGGCTAGATTTCATACCAGAAAATTATCTCCAAGTATCATCACCTTCTACACCATTTTCGTCTTCGCTTTCTCCGTCTTCATCTTCTTGTTATACGTAAGAACCTTCATCACCGACGAAGAAGATCAACCGCATCCTCACATTTCTCGATCTCACGAGGTGCCAAAGCCACCTAGGTTCAAGGACGACGGACAACTTTGGGTTTCTCCTAACAGTCATGGATTCCACCCTTGTGTCAAGCCAACTGCGAAATATAAAGGTGTCCAACAATTTGATCGCTATCTGTCTGTTAGAAGTAACGGTGGACTCAATCAAATGCGAACTGGTATAGCAGACATGGTGGCTGTGGCACATATAATGAATGCAACTTTAGTCATCCCTCAGTTGGATAAACGTTCATTCTGGAAAGACTCGAGTGTATTTTCAGACGTATTCGATGAGTTTCATTTCATTGAATCCCTGAAAGGAGATATCGGGATTGTTCAGGAACTTCCCAAGAACTTGGAAGCTGCCCCTCGGGCTAGGAAACACTTTACTTCCTGGTCTGGAGTTGGTTATTATGAAGAGATGACAAGGTTATGGAATGATTATCAGGTGATTCATGTTGCCAAATCAGATTCTCGACTTGCAAACAATGATCTTCCTCTAGACATCCAGAGGTTGAGATGCCGTGCGATGTATCATGCACTTCGATTTTCTCCTCCTATTGAGAATCTAGGAAAGAGGTTGGTAGATCGGCTGAGATCACGCGGGGAAAGATATATTGCTCTCCATCTAAGATATGAGAAAGATATGCTATCTTTTACTGGTTGTGCTTATGGTCTGACAGATGCAGAATCTGAAGAGCTGAGAATTTTAAGGGAGACTACAAATTATTGGAAAGTAAAAAAGATAAACTCAACAGAACAGAGAATTGGAGGATTTTGTCCATTGACTCCAAAGGAGGTTGGCATTTTTCTTCAAGCTCTTGGCTTTCCCCCATCAACACCAATATACATTGCTGCAGGGGAGATCTATGGTGGTAATACTCATCTATCAGAGCTCTCTTCCCGCTTCCCTAATCTAATCTCTAAGGAATCTCTTGCAACTCCTGAAGAGCTAAAAGCTTTCACCAATCATGCATCTCAAAATGCTGCAGTCGATTACATAATCTCTGTAGAGAGTGATGTGTTTGTTCCATCTTATTCGGGAAATATGGCACGAGCTGTTGAGGGACACCGCAGGTTCTTAGATCACCGCAAAACAATCAACCCAGACAGGAAAGGACTTGTTGGAATATTTGATAAGCTGGAAACTGGAGAGCTAGTAGAAGGAGCGGCACTGTCACATATGGTGCAGCGGATGCACAAGAACAGGCAAGGAGCTCCAAGGAAAAGACAAGGTTCATTACCGGGAGTTAAAGGCCGGGCACGTTTCAGGACTGAAGAGTCCTTTTATGAAAATCCATACCCAGAGTGTATATGTGGTTCGAGAAACAAACTAGAAAGAATGTGA 1563 0.428 MQTRVFLNRSVKKKKESKYIRGFMARFHTRKLSPSIITFYTIFVFAFSVFIFLLYVRTFITDEEDQPHPHISRSHEVPKPPRFKDDGQLWVSPNSHGFHPCVKPTAKYKGVQQFDRYLSVRSNGGLNQMRTGIADMVAVAHIMNATLVIPQLDKRSFWKDSSVFSDVFDEFHFIESLKGDIGIVQELPKNLEAAPRARKHFTSWSGVGYYEEMTRLWNDYQVIHVAKSDSRLANNDLPLDIQRLRCRAMYHALRFSPPIENLGKRLVDRLRSRGERYIALHLRYEKDMLSFTGCAYGLTDAESEELRILRETTNYWKVKKINSTEQRIGGFCPLTPKEVGIFLQALGFPPSTPIYIAAGEIYGGNTHLSELSSRFPNLISKESLATPEELKAFTNHASQNAAVDYIISVESDVFVPSYSGNMARAVEGHRRFLDHRKTINPDRKGLVGIFDKLETGELVEGAALSHMVQRMHKNRQGAPRKRQGSLPGVKGRARFRTEESFYENPYPECICGSRNKLERM* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3340 520 MobiDBLite consensus disorder prediction 472 491 - -
Mtr3g3340 520 Pfam GDP-fucose protein O-fucosyltransferase 117 432 IPR019378 -
Mtr3g3340 520 PIRSF UCP009360 2 515 IPR024709 -
Mtr3g3340 520 PANTHER OS02G0726500 PROTEIN-RELATED 17 515 - -
Mtr3g3340 520 CDD O-FucT_plant 117 438 IPR024709 -
Mtr3g3340 520 PANTHER O-FUCOSYLTRANSFERASE 38 17 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3340 Mtr-Chr3 47339604 47345417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3340 85 511 Miscellaneous Gene Families AT1G22460 58.645 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3340 - - mtr:MTR_3g096020 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4336 3 57284061 57291869 Mtr3g3340 3 47339604 47345417 ECH
Mtr3g3340 3 47339604 47345417 Mtr3g3340 3 47339604 47345417 ECH