Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3339 ATGAATCCTCAAATTTCAAACAGAATCGAATTACTTCAACTCCCAAAACCCTTATTCCCTCGCAAAACCTTCTTCTTCACCCAATTCCCTCATTCTTGTTTTTCTCAACGCCTTCTTAGAACCAAATTCCCATACAAAAACCCTCGCAACTGCAAACTCAGAATCACCGCTTCCAATGTTTCAAATACATCTTCCTCCAACGATGAAGATGCTCAATCTCTTCAGCTTTTCGAGAATCGGGTGAATGAGATGGAAGAACTTCAGAGGAAGGCTAATGTGCAGTTAGATAGGCAACTTATATTGGCTTCTTCATGGAATAGAGCTTTGTTGACTTTTCGTGGGAAATTAAAAGGAACTGAATTGGATCCTGAAAATTCACATAGGATTGATTTCAGTGATTTTTTGAAATTGCTCGACTCCAATGCTGTCAAGTCTATTGAGTACTCTGATTATGGACAGACCTTATCAGTTATTTTACCATATTACAAGAACGTAAAAACATCAGGCACTGAAGAAAATCCCAAGGATATTGTTTTTCGGCGTCATGCGGTTGATCGAATGCCGATTGATTGTTGGAATGATGTTTGGGGGAAGCTGCATCAACAAAATGTAAATGTTGATGTCATTAATGTAGATGCTGTACCTGCTGAAGTATACTCAACGGTTGCAACTGCAGTTGTATGGTCTATGCGTCTTGCCCTGGCTGTTGGATTTTTTATGTGGATTGATAATTTGATGAGACCAATATATGCAAAGTTGATACCTTGTGATTTGGGAACTCCTCCGCCTACCCCACAAACTAAGGTGCCAGCCTTAAGAAGACACGCACTTGGTTCTCTAGGCAAAAGTCGGGCTAAATTTATATCTGCAGAAGAAAGAACTGGCGTTACATTTGATGATTTTGCTGGCCAGGAATATATAAAGAGGGAACTACAAGAGATTGTCCGAATTTTAAAGAACGAGGAGGAGTTTCAAGACAAAGGAATTTATTGTCCAAAAGGTGTTCTTCTTCACGGACCTCCTGGAACCGGTAAAACTTTACTGGCTAAAGCCATCGCAGGTGAAGCAGGGTTGCCCTTTTTTGCTGCTAGTGGCACGGATTTTGTAGAGATGTTTGTAGGGGTTGCTGCATCCCGTGTTAAAGATCTTTTTGCCAATGCAAGATCATTTGCGCCTTCTATAATCTTTGTTGATGAGATTGATGCTATTGGTAGCAAGCGTGGAGGACCTGATATTGGTGGAGGAGGTGCTGAAAGGGAACAAGGATTACTTCAGATATTGACTGAGATGGACGGATTCAAAGTTTCCACAGCACAGGTGCTCGTGATAGGTGCTACAAATAGATTGGATATTCTTGATCCTGCTCTTTTGAGGAAGGGTCGTTTCGACAAGATCATTAGAGTTGGTTTACCTTTACAAGATGGAAGACTTGCCATTTTGAAGGTGCATGCCATGAATAAGTCTTTTCGCTCAGAAGAAGAAAAGGATACTCTACTGACGGAAATTGCAGAGCTAACAGAAGATTTTACTGGGGCAGAGCTGCAAAATATACTGAATGAAGCTGGAATTTTAACGGCCAGGAAGGATCTGGATTACATCGGACGTGATGAGTTGCTTGAGGCATTAAAAAGGCAAAAAGGAACATTTGAAACAGGGCAAGAGGATACTGCAGAAATTCCTGAAGATCTGAGACTGAGATTGGCATATAGAGAAGCAGCTGTGGCTGTTCTTGCCTGTTATTTTCCTGAACCGCACCGCCCTATTGTTGAGACTGATATAAGTTCTATTCAAAGCCAGCCAAATATGTGTTATAATGAAAGTTCTGGAAAGGTTTTTGCTAGGAAATCAGATTACATAAACTCTATAGTGCGTTCTTGTGCTCCAAGAGTAATTGAGGAGGAGATGTTCGGGATCGACAACTTGTGCTGGATGTCTGCAAATGCAACATCAGAAGCTTCAAGGCTTGCAGAATTTTTTATTCTGCGGACTGGAATGACTGCATTTGGGAAAGCATATTACAGAAACAATGTCGATCTTGTGCCTAATCTTGCAGTGAAGCTTGAAGCACTCCGAGATGAGTATCTGCGTTATGGTACAGAGAAGTGTTCATCTGTGCTAAAAGAGTACCATTCAGCGGTTGAGACAATCACAGATATTTTGCTTGAAAAGGGGAAAATCAAAGCTGAGGAGATTTGGAACATTTATAAAAGTGCTCCTCGTGTAGCTCAGCCTTCTGTGAGTCCACTTGATGAATACGGGGCACTGATTTATGCTGGACGGTGGGGAATCCACGGGATTAGTCTTCCTGGAAGGGTTACATTTGCACCGGGCAATGTTGGGTTTTCAACCTTTGGTGCACCACGCCCTACAGAGACGAAAGTTGTTAATGATGAAACATGGAAACTAGTAGATGATGTCTGGGATAAAAAGGTTCAAGATATTAGAGATGAAGCTTTGAGGGAGATTGAAGAAGAGAAAGAAAAGCCACAACTTTTGATGGCAAGTCATTTCCTCTGA 2517 0.4148 MNPQISNRIELLQLPKPLFPRKTFFFTQFPHSCFSQRLLRTKFPYKNPRNCKLRITASNVSNTSSSNDEDAQSLQLFENRVNEMEELQRKANVQLDRQLILASSWNRALLTFRGKLKGTELDPENSHRIDFSDFLKLLDSNAVKSIEYSDYGQTLSVILPYYKNVKTSGTEENPKDIVFRRHAVDRMPIDCWNDVWGKLHQQNVNVDVINVDAVPAEVYSTVATAVVWSMRLALAVGFFMWIDNLMRPIYAKLIPCDLGTPPPTPQTKVPALRRHALGSLGKSRAKFISAEERTGVTFDDFAGQEYIKRELQEIVRILKNEEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAASGTDFVEMFVGVAASRVKDLFANARSFAPSIIFVDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPLQDGRLAILKVHAMNKSFRSEEEKDTLLTEIAELTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDTAEIPEDLRLRLAYREAAVAVLACYFPEPHRPIVETDISSIQSQPNMCYNESSGKVFARKSDYINSIVRSCAPRVIEEEMFGIDNLCWMSANATSEASRLAEFFILRTGMTAFGKAYYRNNVDLVPNLAVKLEALRDEYLRYGTEKCSSVLKEYHSAVETITDILLEKGKIKAEEIWNIYKSAPRVAQPSVSPLDEYGALIYAGRWGIHGISLPGRVTFAPGNVGFSTFGAPRPTETKVVNDETWKLVDDVWDKKVQDIRDEALREIEEEKEKPQLLMASHFL* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3339 838 SUPERFAMILY FtsH protease domain-like 560 740 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Mtr3g3339 838 Gene3D - 279 469 IPR027417 -
Mtr3g3339 838 Coils Coil 808 828 - -
Mtr3g3339 838 Pfam ATPase family associated with various cellular activities (AAA) 335 469 IPR003959 GO:0005524|GO:0016887
Mtr3g3339 838 Gene3D Peptidase M41 553 740 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Mtr3g3339 838 Pfam AAA+ lid domain 499 539 IPR041569 -
Mtr3g3339 838 PANTHER METALLOPROTEASE M41 FTSH 52 806 - -
Mtr3g3339 838 Gene3D - 471 551 - -
Mtr3g3339 838 Coils Coil 74 94 - -
Mtr3g3339 838 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 52 806 - -
Mtr3g3339 838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 544 IPR027417 -
Mtr3g3339 838 SMART AAA_5 331 472 IPR003593 -
Mtr3g3339 838 CDD AAA 302 470 - -
Mtr3g3339 838 ProSitePatterns AAA-protein family signature. 440 458 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3339 Mtr-Chr3 47327637 47338689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3339 296 579 Miscellaneous Gene Families AT3G47060 47.183 3.06e-68 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3339 - - gmx:100804743 1343.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3339 3 47327637 47338689 Mtr3g3339 3 47327637 47338689 ECH