Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3316 ATGGCAACAAAAGCTTTGGCCTTCACTTTTTCTTTCAATGACCTCTTTGGTTCCAAGGCGCCGCCACACACCTCTGCAAAAGTTTCTGTCTTTTCTGTTAGATGTTCTTCTGGTAATGGGGAAAGGCCATGGAAAAATTCAGATGCTAGACTTTTGCTGGAAGATGGTTCAATTTGGAAAGCTAAATCATTTGGTGCTTCAGGAACCCAAGTTGGTGAAGTTGTTTTCAATACATCTTTGACTGGGTATCAAGAAATTTTAACTGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAATCCACATATTGGGAATACTGGCATAAATTTTGATGATGAAGAATCAACAGAGTGCTTCCTTTCCGGTCTAGTAATTAGAAGTTTGAGTATCAGTACCTCGAACTGGAGATGTGTGAAAGATTTGGGCGATTACTTAACTGAAAGGAATGTCATGGGAATTTATGATGTTGATACACGAGCAATCACACGTAGATTACGGGAAGATGGCAGCCTTATTGGTGTTTTGAGCACTGACAATTCCAAAACAGACGAGGAATTACTTCAGATGTCTAAATCATGGGATATTGTTGGTATTGATCTGATAAGTGGAGTATCGTGCAAGTCTCCATATGAATGGGTTGATAGAACAAAGGAAGAATGGGAGTTTAGCTCCAGTGAAGGGCCTAGAGATACTTTCCATGTAGTTGCATACGATTTTGGAATAAAGCATAATATACTTAGGCGTCTAGCATCATATGGCTGTAAAATCACTGTTGTGCCGTCTACATGGCCAGCATCCGAAACTTTGAAGTTAAATCCAGATGGTGTACTTTTCAGCAATGGTCCTGGAGATCCTTCTGCTGTTCCTTATGCCGTTGAAACAGTAAAGAATATCATTGGAAAGGTGCCTGTTTTTGGAATTTGCATGGGACATCAACTGCTAGGCCAGGCTTTAGGAGGTACAACCTACAAGATGAAATTTGGTCACCATGGAGGAAATCATCCTGTTCGTAACCTTCGAACTGGCCGTGTTGAAATTAGTTCTCAGAACCACAACTATGCAGTTGACCCTGCCACACTGCCTGAAGGAGTAGAAGTTACTCATATCAATCTCAATGACAGTAGTTGTGCCGGTCTTGCTTTCCCTGCTCAAAAGATTGTGTCTCTTCAGTACCACCCTGAAGCTTCTCCTGGACCTCATGATTCTGACAACGCTTTTCGGGAGTTTATAGAGCTAATGAAGCATGAGAAAAACCAAACACCGAATGAAAACCTACACCAACTACAATCAGTGTAA 1299 0.4142 MATKALAFTFSFNDLFGSKAPPHTSAKVSVFSVRCSSGNGERPWKNSDARLLLEDGSIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGINFDDEESTECFLSGLVIRSLSISTSNWRCVKDLGDYLTERNVMGIYDVDTRAITRRLREDGSLIGVLSTDNSKTDEELLQMSKSWDIVGIDLISGVSCKSPYEWVDRTKEEWEFSSSEGPRDTFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKLNPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGTTYKMKFGHHGGNHPVRNLRTGRVEISSQNHNYAVDPATLPEGVEVTHINLNDSSCAGLAFPAQKIVSLQYHPEASPGPHDSDNAFREFIELMKHEKNQTPNENLHQLQSV* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3316 432 CDD GATase1_CPSase 235 411 IPR035686 -
Mtr3g3316 432 Gene3D - 196 418 IPR029062 -
Mtr3g3316 432 TIGRFAM CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 49 415 IPR006274 GO:0004088|GO:0006207|GO:0006541
Mtr3g3316 432 SMART CPSase_sm_chain_2 47 177 IPR002474 -
Mtr3g3316 432 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 28 420 - -
Mtr3g3316 432 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 234 420 - -
Mtr3g3316 432 Hamap Carbamoyl-phosphate synthase small chain [carA]. 47 418 IPR006274 GO:0004088|GO:0006207|GO:0006541
Mtr3g3316 432 Pfam Glutamine amidotransferase class-I 238 412 IPR017926 -
Mtr3g3316 432 PRINTS Anthranilate synthase component II signature 277 286 - -
Mtr3g3316 432 PRINTS Anthranilate synthase component II signature 304 315 - -
Mtr3g3316 432 PRINTS Anthranilate synthase component II signature 389 402 - -
Mtr3g3316 432 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 51 175 IPR002474 -
Mtr3g3316 432 Gene3D - 47 195 IPR036480 -
Mtr3g3316 432 PRINTS Glutamine amidotransferase superfamily signature 277 286 - -
Mtr3g3316 432 PRINTS Glutamine amidotransferase superfamily signature 304 315 - -
Mtr3g3316 432 PRINTS Glutamine amidotransferase superfamily signature 389 402 - -
Mtr3g3316 432 SUPERFAMILY Class I glutamine amidotransferase-like 201 416 IPR029062 -
Mtr3g3316 432 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 28 420 - -
Mtr3g3316 432 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 235 249 - -
Mtr3g3316 432 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 274 288 - -
Mtr3g3316 432 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 304 320 - -
Mtr3g3316 432 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 321 338 - -
Mtr3g3316 432 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 346 357 - -
Mtr3g3316 432 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 48 192 IPR036480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3316 Mtr-Chr3 47095055 47098452 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3316 K01956 - gmx:100806168 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3316 3 47095055 47098452 Mtr3g3316 3 47095055 47098452 ECH