Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3044 ATGAGTCGTCGAGGAATGGATCGTGACGATGAAGACGACGAGGAGTATGAGGAACAGGTTGAAGATTTCGATGAAGAGGAAGCTGAGGAGGAAGAGGAGAGAGGCGGTGGCGGTGGCGGTGGAAAGAAGCGGAGGAGGCCCAGTTTTATCGATGATGATGCGGAGGAGGTAGATGAAGATGAGGAGGAGGACGAAGAGGATTATGATGATGATGATTACGACGGCGGCGGCAAAGGAAGTAGCCGTAAGCGGCAGTATAGGAAGGTTTCCGCTTCAAATTTCTTTGACGAAGAGGCTGCTGTTGATTCGGATGAGGAGGAGGAGGAAGAAGAAGTCGAAGACGGCTTCATTGTTGGGCCTGATGTGCAAGACGAAGATGATAATAGAGGAAGGCCACGTCACAGACAGCCACCCCACCAAGAAGATCATGAAGACCTTGAAGAGATGGCAAGAAGGATACAAGAGAGATATGGAAAGCAGCGGTTGGCAGAATACGATGAAGAAACTACAGATGTAGAACAGCAAGCACTTTTGCCATCTGTGAGAGACCCAAAGCTGTGGATGGTCAAATGCGCGATTGGCCGTGAGCGTGAAACAGCTGTTTGCCTCATGCAAAAGTACATAGATAAGGGGTCAGAATTGCAAATCAGATCAGCTATTGCTCTTGATCATCTCAAAAACTACATATATGTGGAAGCAGATAAAGAAGCTCATGTTAGAGAGGCTTGCAAAGGTCTTCGCAATATATTTGGACAAAAAATAACACTCGTTCCAATAAGAGAAATGACTGATGTGCTGTCAGTTGAAAGCAAAGCCATTGATCTTGCTAGAGATACTTGGGTTAGAATGAAGATTGGGACATACAAGGGGGACCTTGCCAAAGTAGTGGATGTTGATAATGTACGGCAGAGGGTTAGAGTGAAACTAATTCCGAGGATAGATTTACAGGCTCTCGCAAACAAATTGGAAGGTAGAGAAGTTGTGAAAAAGAAGGCATTTGTCCCCCCTCCTCGTTTTATGAATGTTGAAGAAGCTAGGGAACTGCATATCCGTGTTGAGCATAGGCGTGATGCCACCGGCGGGGAACGGTTTGACACCATTGGAGGCATGATGTTTAAAGATGGGTTCTTATACAAATCTGTATCTATAAAATCCCTTTATTCCCAGAACATCAAACCTACGTTTGACGAGCTCGAAAAATTTCGTAAACCGGGTGAAACTGGAGATGTAGCCAGTCTGTCAACTCTGTTTGCCAACAGAAAGAAAGGGCATTTCATGAAAGGTGATGCAGTTATTGTCATCAAGGGCGATTTGAAGAATTTAAAGGGATGGGTGGAGAAAGTTGACGAGGATAATGTTCATATTAGACCAGAAATGAAGGATTTACCTAAAACTCTTGCAGTAAATGAAAAGGAACTTTGTAAATATTTTGAACCCGGAAACCATGTTAAAGTTGTTTCTGGTGCTCAAGAGGGTGCTACTGGCATGGTTGTGAAGGTGGAGCAGCATGTCCTGATCTTAATATCTGATACCACAAAGGAGCATATCCGTGCGTTTGCAGATGATGTTGTAGAGAGTTCTGAAGTAACCACCGGTGTGACTAAAATTGGGGACTATGAACTTCGTGATCTTGTATTGCTAGACAATTCGAGTTTTGGTGTCATAATCCGTGTAGAAAGTGAGGCATTTCAGGTTCTTAAGGGTGTTACTGACAGACCTGAAGTTGTGCTTGTTAAATTAAGAGAGATCAAGTGTAAGCTAGAGAAGAAAATAAATGTGCAGGATAAGTTTAGGAATACAGTATCATCAAAAGATGTTGTGCGGATTCTTGAAGGTCCCTGCAAAGGAAACCAAGGTTCTGTGGAGCACATATATAGAGGGGTCTTGTTCGTCTTCGATCGCCATCATCTTGAACATGCAGGCTTTATGTGTGTTAAGGCCCAATCATGTGTAGTTGTGGGAGGTTCACGCTCCAATAGTGACAGAAATGGTGATGTACACTCGAGATTCCCCGGTCTTAGAACTCCACCTCGCATTCCACAGTCCCCACATAGGTTTTCTCGAGGAGGGCCTCCATCTGCTGGAGGTAGACATAATAGGGGTGGAAGGGGGCATGATGGTTTGACGGGTGCAACTGTTAAAGTACGACAGGGCTCCTATAAAGGTTATCGTGGACGTGTTATAGAAGTTAAAGGATCATTCGTTCGGGTTGAATTGGAATCCCAAATGAAGGTTGTAACCGTTGACCGCAATCATATATCTGACAATGTGGCCGTTACCCCACAACGTGAAACATCATCTCGATATGGGATGGGAAGTGAAACCCCAATGCATCCATCTCGAACTCCTTTGCACCCATATATGACTCCGATGAGAGATGCAGGAGCAACTCCAATTCATGATGGAATGAGGACACCTATGCGTGACCGAGCTTGGAATCCTTATGCGCCAATGAGTCCTCCTAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGGGCCAGTCCACAGTATCAGCCAGGTAGCCCTCCTTCCCGGCCATATGAAGCACCAACTCCTGGTGCTGGTTGGGCTAGTACTCCCGGTGGCAATTATAGTGAGGCCGGAACGCCACGGGACAGTTCTGCCTACGCTAATGCTCCAAGCCCATATTTACCATCAACACCAGGGCAGCCTATGACACCAAATTCTGCATCTTATCTTCCTGGCACCCCTGGAGGACAGCCTATGACTCCAGGAACTGGTGGTCTGGACATCATGTCCCCAGTATTGGGTGGGGACAATGAAGGGCCTTGGTTTATGCCAGACATATTGGTCAATGTACACAGGGCCGGAGAGGAGTCTGTTGGAGTTATAAAAGAAGTTCTCCCGGATGGTTCTTATAGGGTAGCCCTTGGGTCTAACGGAAATGGTGAAACAATATCGGCCCTTTCCAATGAAGTGGAGGCTGTAGTGCCAAGAAAATCTGATAAAATAAAGATAATGGGAGGAGGGACTTTGCGAGGTTCCACTGGCAAGTTGATTGGTGTGGATGGCACTGATGGCATAGTAAAAGTAGACGACACGTTGGATGTGAAGATTTTAGACTTGGTTATTCTGGCAAAATTAGCTCAACCATGA 3123 0.4582 MSRRGMDRDDEDDEEYEEQVEDFDEEEAEEEEERGGGGGGGKKRRRPSFIDDDAEEVDEDEEEDEEDYDDDDYDGGGKGSSRKRQYRKVSASNFFDEEAAVDSDEEEEEEEVEDGFIVGPDVQDEDDNRGRPRHRQPPHQEDHEDLEEMARRIQERYGKQRLAEYDEETTDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVRVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVEEARELHIRVEHRRDATGGERFDTIGGMMFKDGFLYKSVSIKSLYSQNIKPTFDELEKFRKPGETGDVASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEMKDLPKTLAVNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRAFADDVVESSEVTTGVTKIGDYELRDLVLLDNSSFGVIIRVESEAFQVLKGVTDRPEVVLVKLREIKCKLEKKINVQDKFRNTVSSKDVVRILEGPCKGNQGSVEHIYRGVLFVFDRHHLEHAGFMCVKAQSCVVVGGSRSNSDRNGDVHSRFPGLRTPPRIPQSPHRFSRGGPPSAGGRHNRGGRGHDGLTGATVKVRQGSYKGYRGRVIEVKGSFVRVELESQMKVVTVDRNHISDNVAVTPQRETSSRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGQPMTPNSASYLPGTPGGQPMTPGTGGLDIMSPVLGGDNEGPWFMPDILVNVHRAGEESVGVIKEVLPDGSYRVALGSNGNGETISALSNEVEAVVPRKSDKIKIMGGGTLRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3044 1040 CDD KOW_Spt5_3 476 526 IPR041976 -
Mtr3g3044 1040 SMART kow_9 476 503 IPR005824 -
Mtr3g3044 1040 SMART kow_9 600 627 IPR005824 -
Mtr3g3044 1040 SMART kow_9 986 1014 IPR005824 -
Mtr3g3044 1040 SMART kow_9 424 451 IPR005824 -
Mtr3g3044 1040 SMART kow_9 274 301 IPR005824 -
Mtr3g3044 1040 SMART kow_9 706 733 IPR005824 -
Mtr3g3044 1040 MobiDBLite consensus disorder prediction 864 885 - -
Mtr3g3044 1040 CDD KOW_Spt5_2 425 475 IPR041975 -
Mtr3g3044 1040 PANTHER SUPPRESSOR OF TY 5 28 1038 IPR039659 GO:0006357|GO:0032784
Mtr3g3044 1040 MobiDBLite consensus disorder prediction 1 146 - -
Mtr3g3044 1040 MobiDBLite consensus disorder prediction 761 784 - -
Mtr3g3044 1040 CDD KOW_Spt5_4 604 646 IPR041977 -
Mtr3g3044 1040 Gene3D - 419 476 IPR014722 -
Mtr3g3044 1040 MobiDBLite consensus disorder prediction 656 710 - -
Mtr3g3044 1040 Gene3D - 274 316 IPR014722 -
Mtr3g3044 1040 MobiDBLite consensus disorder prediction 122 146 - -
Mtr3g3044 1040 ProSitePatterns Ribosomal protein L24 signature. 428 445 IPR005825 GO:0003735|GO:0005840|GO:0006412
Mtr3g3044 1040 SUPERFAMILY Translation proteins SH3-like domain 468 527 IPR008991 -
Mtr3g3044 1040 Pfam KOW motif 479 504 IPR005824 -
Mtr3g3044 1040 SUPERFAMILY Translation proteins SH3-like domain 417 455 IPR008991 -
Mtr3g3044 1040 Gene3D - 690 756 IPR014722 -
Mtr3g3044 1040 SMART nusgn_4 183 269 IPR006645 GO:0140673
Mtr3g3044 1040 MobiDBLite consensus disorder prediction 34 52 - -
Mtr3g3044 1040 MobiDBLite consensus disorder prediction 10 33 - -
Mtr3g3044 1040 CDD KOW_Spt5_6 980 1038 IPR041980 -
Mtr3g3044 1040 CDD NGN_Euk 185 267 IPR039385 -
Mtr3g3044 1040 MobiDBLite consensus disorder prediction 98 121 - -
Mtr3g3044 1040 Gene3D - 165 267 IPR036735 GO:0006355
Mtr3g3044 1040 MobiDBLite consensus disorder prediction 798 924 - -
Mtr3g3044 1040 CDD KOW_Spt5_5 706 754 IPR041978 -
Mtr3g3044 1040 MobiDBLite consensus disorder prediction 53 73 - -
Mtr3g3044 1040 Coils Coil 6 33 - -
Mtr3g3044 1040 CDD KOW_Spt5_1 278 315 IPR041973 -
Mtr3g3044 1040 Pfam Early transcription elongation factor of RNA pol II, NGN section 185 266 IPR005100 -
Mtr3g3044 1040 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 28 1038 - -
Mtr3g3044 1040 Pfam Spt5 transcription elongation factor, acidic N-terminal 94 179 IPR022581 -
Mtr3g3044 1040 Gene3D - 479 528 IPR014722 -
Mtr3g3044 1040 PIRSF Spt5 2 1040 IPR017071 GO:0006357|GO:0032784
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3044 Mtr-Chr3 44314949 44322372 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3044 K15172 - gmx:100801380 1674.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3044 3 44314949 44322372 Mtr3g3044 3 44314949 44322372 ECH