Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3042 ATGCAACAAGTAAAAAAAATTGGTGGAATCACAAAGAGTTTCAACCCATCAAATTGGTCTCATTCAATAAGGAACAACAGTACTAACCAAGCATCATTGAAAAGGGCTCTTGTTTTGTATAAACAAACTCGCCATGACACAACACACGACCCCACCGTGATCCCTCAGTTACTCAAAGCATGCGATTCTCACCCCTTCCTTCCTTACGTTAAATCCTTACACGCAGAATCCATCAAAGCTGGTTCTGATGTGGATGTGTTCATTGGAACCGCCATTGTTGCAGCATATGCAAAATGTGGCGTTGTTTGTGATGCACGCAAGGTGTTTGATTTAATGCCTGAAAGAAATGTTGTGACTTGGAATGCAATGATTGGTGGGTATTTGAGAAATGGTGATGCTAAATCTGCGTTACTTGCGTTTGAAGAAATGCCAGGGAAAACGAGGGTGAGTTGGAGTCAGATGATTGGTGGGTTTGCTAGGAATGGTGATACTTTAACTGCTAGGAAGTTTTTTGATAAGGTTCCGTATGAGTTGAAGGATGTGGTGATATGGACTGTGATGGTTGATGGATATGCTAAGAAAGGGGAAATGGAAGATGCAAGAGAGGTTTTTGAGTTAATGCCTGAAAGGAATTATTTTGTTTGGTCATCTATGGTTTGTGGGTACTGCAAGAAGGGTGATGTTATGGAGGCTGAGGCGATTTTTCGACGGATTCCAGTTCGGAATTTGGAGATTTGGAATTCCATGATTGCTGGGTATGTACAGAATGGATGTGGTGAGAAAGCATTGGAGGCTTTTGGAGAAATGGGAGTCGATGGGTTTGAGCCGGATGAGTTCACCGTTGTTAGTGTTTTATCTGCTTGTGCTCAGCTTGGGGACTTGGATGCTGGAAAACAGATGCATCACATGATAGAATGTAAAGGAATAGCTGTGAACCAGTTTGTTTTGAGTGGATTGATCGACATGTATGCAAAATGTGGGGACTTGGTTAATGCAAGGTTGGTATTTGAAAGTTGTAATGAGAGAAACGTTTTCTGCTGGAATGCTATGATTGCGGGTTTTGCCGTCAATGGACAATGCAATGAGGTTCTTGAGTATTTGGATAGGATGCAGGAGTCAAATATAAGGCTTGATGCTGTCACGTTTATTACTGTACTCTCAGCTTGTGCTCATGGAGGTCTGATGAGCGAAGCATTGGAAGTGATATCTAAAATGGAGGAATATGGAATTGAAATGGGCATCAGGCATTATGGATGCATGGTTGACCTCTTGGGAAGAGCAGGGAAGTTAAAAGAGGCATATGAGTTAATAAAAAGAATGCCAATGAAACCTAATGAAACAGTTTTGGGGGCAATGATCGGTGCTTGTTGGATTCATTCAGATATGAAAATGGCAGAACAAGTAATGAAGATGATCGGTGCAGACTCTGCTGCTTGTGTTAATTCGCACAATGTGCTTCTGTCAAATATCTACGCAGCTTCAGAAAAATGGGAGAAAGCTGAAATGATAAGGAGTAGCATGGTTGATGGAGGATCTGAAAAGATACCAGGAGTTTTTGTGATCAAGCCTGAAAGAATAGCATCTCGTGAGTACTTAGCAGGTCGAAAAGCAATAACCAAGAGTGGTCAGCTTCATAACAGACTTATTTACTCTCCACCCTGCCTAAGCATAACAATGTAA 1680 0.4161 MQQVKKIGGITKSFNPSNWSHSIRNNSTNQASLKRALVLYKQTRHDTTHDPTVIPQLLKACDSHPFLPYVKSLHAESIKAGSDVDVFIGTAIVAAYAKCGVVCDARKVFDLMPERNVVTWNAMIGGYLRNGDAKSALLAFEEMPGKTRVSWSQMIGGFARNGDTLTARKFFDKVPYELKDVVIWTVMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKGIAVNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRMQESNIRLDAVTFITVLSACAHGGLMSEALEVISKMEEYGIEMGIRHYGCMVDLLGRAGKLKEAYELIKRMPMKPNETVLGAMIGACWIHSDMKMAEQVMKMIGADSAACVNSHNVLLSNIYAASEKWEKAEMIRSSMVDGGSEKIPGVFVIKPERIASREYLAGRKAITKSGQLHNRLIYSPPCLSITM* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3042 559 Gene3D Tetratricopeptide repeat domain 212 314 IPR011990 GO:0005515
Mtr3g3042 559 Gene3D Tetratricopeptide repeat domain 315 556 IPR011990 GO:0005515
Mtr3g3042 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Mtr3g3042 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Mtr3g3042 559 Gene3D Tetratricopeptide repeat domain 144 211 IPR011990 GO:0005515
Mtr3g3042 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Mtr3g3042 559 PANTHER OS01G0913400 PROTEIN-RELATED 15 518 - -
Mtr3g3042 559 PANTHER BNACNNG13520D PROTEIN 15 518 - -
Mtr3g3042 559 TIGRFAM PPR: pentatricopeptide repeat domain 345 379 IPR002885 -
Mtr3g3042 559 TIGRFAM PPR: pentatricopeptide repeat domain 380 412 IPR002885 -
Mtr3g3042 559 TIGRFAM PPR: pentatricopeptide repeat domain 245 278 IPR002885 -
Mtr3g3042 559 TIGRFAM PPR: pentatricopeptide repeat domain 214 242 IPR002885 -
Mtr3g3042 559 TIGRFAM PPR: pentatricopeptide repeat domain 182 211 IPR002885 -
Mtr3g3042 559 TIGRFAM PPR: pentatricopeptide repeat domain 118 143 IPR002885 -
Mtr3g3042 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Mtr3g3042 559 SUPERFAMILY TPR-like 29 237 IPR011990 GO:0005515
Mtr3g3042 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Mtr3g3042 559 Pfam PPR repeat family 342 390 IPR002885 -
Mtr3g3042 559 Pfam PPR repeat family 243 289 IPR002885 -
Mtr3g3042 559 Pfam E motif 481 521 IPR046848 -
Mtr3g3042 559 Gene3D Tetratricopeptide repeat domain 23 143 IPR011990 GO:0005515
Mtr3g3042 559 Pfam PPR repeat 118 144 IPR002885 -
Mtr3g3042 559 Pfam PPR repeat 416 441 IPR002885 -
Mtr3g3042 559 Pfam PPR repeat 182 211 IPR002885 -
Mtr3g3042 559 Pfam PPR repeat 214 241 IPR002885 -
Mtr3g3042 559 Pfam PPR repeat 149 173 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3042 Mtr-Chr3 44305258 44309741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3042 243 509 Glycoside Hydrolase AT3G49170 22.535 1.62e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3042 - - mtr:MTR_3g089880 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3042 3 44305258 44309741 Mtr3g3042 3 44305258 44309741 ECH