Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3026 ATGGTTGGGAAGGATAATTTAAAGACTGAGGATTTGAATTTGTTTTTTGAGAATCTTATGATGGTTGCTGGTGGTGAGAAAGGAGGGAACATGAAGGTTGGTGTGATCACTGAATGGAAGGATATTCCTGTTGAGCTTTTGATGCAGATTCTGTCTCTTGTGGATGATCAGACTGTGATTCGAGTTTCTGGTGTTTGTCGTGGTTGGAGAGATTCTATTTACTTTGGCCTTGCTCGTTTATCACTCTCTTGGTGTAACAAGAACATGAACAACTTGGTCCTATCTCTTGTTCCCAAGTTTGCAAAACTGCAAACTCTAATCCTTCGTCAAGATAAGCCACAACTGGACGACAATGTTGTTGGCACTATTGCAAATTTCTGTCATGACCTGCAGATTCTTGACCTCAGCAAAAGTTTCAAGCTCACTGATCGCTCACTGTACGCTATCGCTCATGGTTGCCGCGATCTTACAAAACTAAATATCAGTGGATGTTCAGCATTTAGTGACAATGCTCTGGCCTACCTTGCTGGTTTCTGTAGAAAACTGAAAGTTCTAAATCTCTGTGGATGTGTTAGAGCAGCTTCTGATACTGCACTTCAGGCTATTGGACACTACTGCAATCAGTTGCAGTCTTTGAACCTTGGATGGTGTGACAAAGTTGGTGATGTTGGAGTGATGAGTCTAGCATATGGTTGTCCTGATCTAAGGACAGTTGATTTGTGTGGCTGTGTCTATATAACAGATGATAGTGTGATTGCTTTGGCAAACGGATGCCCTCACCTGAGGTCCCTTGGACTGTACTTCTGCAAGAACATAACAGACAATGCAATGTATTCATTGGCACAAAGCAAAGTGAAGAACAGGATGTGGGGATCTGTGAAAGGAGGAAATGATGAAGATGGACTAAGGACATTGAACATCAGCCAGTGCACTTCACTCACTCCTTCAGCTGTTCAGGCGGTTTGTGACTCATCTCCTGCTCTCCACACATGCTCAGGGAGGCATTCACTCATCATGAGTGGCTGTCTCAATTTGACCGAAGTCCATTGTGCGTGTGCTGGTCATGCACACCGTGCAATGAACGCTTTCCCCCATCCTGCTCATTAA 1107 0.439 MVGKDNLKTEDLNLFFENLMMVAGGEKGGNMKVGVITEWKDIPVELLMQILSLVDDQTVIRVSGVCRGWRDSIYFGLARLSLSWCNKNMNNLVLSLVPKFAKLQTLILRQDKPQLDDNVVGTIANFCHDLQILDLSKSFKLTDRSLYAIAHGCRDLTKLNISGCSAFSDNALAYLAGFCRKLKVLNLCGCVRAASDTALQAIGHYCNQLQSLNLGWCDKVGDVGVMSLAYGCPDLRTVDLCGCVYITDDSVIALANGCPHLRSLGLYFCKNITDNAMYSLAQSKVKNRMWGSVKGGNDEDGLRTLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTEVHCACAGHAHRAMNAFPHPAH* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3026 368 Pfam F-box-like 40 73 IPR001810 GO:0005515
Mtr3g3026 368 SMART LRR_CC_2 299 324 IPR006553 -
Mtr3g3026 368 SMART LRR_CC_2 232 257 IPR006553 -
Mtr3g3026 368 SMART LRR_CC_2 153 178 IPR006553 -
Mtr3g3026 368 SMART LRR_CC_2 258 283 IPR006553 -
Mtr3g3026 368 SMART LRR_CC_2 206 231 IPR006553 -
Mtr3g3026 368 SMART LRR_CC_2 127 152 IPR006553 -
Mtr3g3026 368 SMART LRR_CC_2 179 205 IPR006553 -
Mtr3g3026 368 SUPERFAMILY F-box domain 38 73 IPR036047 GO:0005515
Mtr3g3026 368 PANTHER UNCHARACTERIZED 1 350 - -
Mtr3g3026 368 Gene3D Ribonuclease Inhibitor 80 299 IPR032675 -
Mtr3g3026 368 SUPERFAMILY RNI-like 75 282 - -
Mtr3g3026 368 Gene3D - 36 79 - -
Mtr3g3026 368 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 350 - -
Mtr3g3026 368 Pfam Leucine Rich repeat 206 229 IPR001611 GO:0005515
Mtr3g3026 368 Pfam Leucine Rich repeat 232 255 IPR001611 GO:0005515
Mtr3g3026 368 Pfam Leucine Rich repeat 258 281 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3026 Mtr-Chr3 44149142 44152577 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3026 K03875 - gmx:100818928 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3026 3 44149142 44152577 Mtr3g3026 3 44149142 44152577 ECH