Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3020 ATGTACCCATTTTTCAAGCACACACAGTATCTTCACTCGACACTTTCTCATTGTTCTACTCTCCTAGATCACTGTTTATCTCATAAATCTTCAAACTTTCTCAATATCGTTCATGCCCACTTTCTCAAATTGGGTCTTAATTCATATACCTATCTGGGTAATCGCTGTATCGATCTTTATACTGAGTTCGGCAACATTAATGATGCATTGAAGGTGTTTGATGATATTTCTTACAAGAACTCAACGTCCTGGAACATTTGCTTAAAAGGGTTGTTTAAAAGTGGTCAAGTTGGTAAGGCATGTTACATGTTTGATGAAATGCCTGTTAGAGATGTTGTTAGTTGGAACACAATGATTTCGGGTTATGCTTCTTGTGGATTTTCTAGTCATGCCTTGGGGGTTTTTGTTGAAATGCAAGGTGCTGGTGTGAGACCAAGTGGGTTTACTTTTTCCATTTTGACATCGCTTGTGTCGAGTTCTTGTCGTGCTAAGGAGGTTCATGGTATGATGATTAGAAGTGGGATGGAATTGTCTAATGTGGTGATTGGAAATTCGTTGATAGCTATGTATGGGAAGTTTGATCTTGTTGATTATTGTTTTGGCGTGATTTTGAGTATGAAGCAGCTTGATTTTATATCTTGGAACTCTTTGATATGGGCTTGTCATAGAGCCGGGCGACAAGAGCTTGCTCTTGAGCAGTTTTGTTGCATGAAAGCTGCGGAGTTGTTGCCTGATGAGTTTACGTGTTCAACATTGATGAGTGTTTGTTCCAACTTGCGAGATTTGGAGAAGGGTAAGCAAGTTTTTGCCTTTTGTTTTAAGGTGGGATTTGTTTATAATAGCATTGTATCAAGTGCTGCTATTGACCTCTTTTCCAAATGCAACAGATTGGAGGATGCTGTGCGGCTCTTTGAAGAACAAGAGCAATGGGATTCAGCTCTATGCAATTCGATGATTTCATGCTATGCTAGACATGATTTGGGGGAAGACGCTCTGCAGCTCTTTATGCCAACCTTGAGGAAGAATATCAGACCAACGAAATACACGGTTAGCTGTCTTCTGAGTTCTGTTTCCATTTTCTTGCCAGTAGAAGTGGGAAATCAAATCCATGCCTTGGTTCATAAATTTGGTTTTGAGTCCGATTCAGTTGTTACCAATTCACTTGTTGATATGTATGCTAAATTTGGATTTATTGATAATGCATTGAATATCTTCAATGAAATAAAAACAAAAGATTTGGTATCATGGAATACTATAATGATGGGACTGTCTTACAATGGCAAAGTGTGTGTGACCATGGACCTCTTTGAGGAATTGAGAAGAGAAGGAATGCCACCTGATCGAATAACGTTGGCTGCAGTTCTACTAGCATGCAACTATGGGAACTTGGTTGATGAAGGAATTAAAATATTTTCCCAAATGGAGATGGAATTTGGAGTAAAACCAGAGGAAGAACATTATTCATATGTTGTGGAGATGTTATGTAGAGCTGGTAACCTCAAAGAAGCCGTTGACATTGTGGAAAAGATGCCGTATAAAACTACCACGGACATTTGGAGGTCAATTCTTTCTGCTTGTGCAGTGTCTGGAGACTTGCAAGATATTGAAGTAGTTGCGACAAAAATAATGGAGAGGGCACCACAAATATCCTTACCTTACTTGGTGTTGGCTCAGGTATATCAGATGAGTGGCAGATGGGAGAGCGCGGTTCGAGTGAGGAAGGCTATGGAAAATAGAGGTAGTAAAGAGTTCATAGGATGCAGTTGGGTTGGCATAAAAAACCATGTATATACTTTTGAATCAAATCAATTACAGCATTATGGTGGCAAAGATATTTATCTGCTGCTGAATTTGCTGGTATGGGAGATGGAGACAGAATGTGGTGTCTAA 1890 0.3942 MYPFFKHTQYLHSTLSHCSTLLDHCLSHKSSNFLNIVHAHFLKLGLNSYTYLGNRCIDLYTEFGNINDALKVFDDISYKNSTSWNICLKGLFKSGQVGKACYMFDEMPVRDVVSWNTMISGYASCGFSSHALGVFVEMQGAGVRPSGFTFSILTSLVSSSCRAKEVHGMMIRSGMELSNVVIGNSLIAMYGKFDLVDYCFGVILSMKQLDFISWNSLIWACHRAGRQELALEQFCCMKAAELLPDEFTCSTLMSVCSNLRDLEKGKQVFAFCFKVGFVYNSIVSSAAIDLFSKCNRLEDAVRLFEEQEQWDSALCNSMISCYARHDLGEDALQLFMPTLRKNIRPTKYTVSCLLSSVSIFLPVEVGNQIHALVHKFGFESDSVVTNSLVDMYAKFGFIDNALNIFNEIKTKDLVSWNTIMMGLSYNGKVCVTMDLFEELRREGMPPDRITLAAVLLACNYGNLVDEGIKIFSQMEMEFGVKPEEEHYSYVVEMLCRAGNLKEAVDIVEKMPYKTTTDIWRSILSACAVSGDLQDIEVVATKIMERAPQISLPYLVLAQVYQMSGRWESAVRVRKAMENRGSKEFIGCSWVGIKNHVYTFESNQLQHYGGKDIYLLLNLLVWEMETECGV* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3020 629 TIGRFAM PPR: pentatricopeptide repeat domain 83 112 IPR002885 -
Mtr3g3020 629 TIGRFAM PPR: pentatricopeptide repeat domain 113 146 IPR002885 -
Mtr3g3020 629 Pfam PPR repeat 479 510 IPR002885 -
Mtr3g3020 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Mtr3g3020 629 Gene3D Tetratricopeptide repeat domain 463 601 IPR011990 GO:0005515
Mtr3g3020 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Mtr3g3020 629 SUPERFAMILY TPR-like 56 571 IPR011990 GO:0005515
Mtr3g3020 629 Pfam PPR repeat 385 412 IPR002885 -
Mtr3g3020 629 Pfam PPR repeat 414 443 IPR002885 -
Mtr3g3020 629 Pfam PPR repeat 315 335 IPR002885 -
Mtr3g3020 629 Pfam PPR repeat 286 306 IPR002885 -
Mtr3g3020 629 PANTHER OS03G0435200 PROTEIN 1 626 - -
Mtr3g3020 629 PANTHER OS07G0578800 PROTEIN-RELATED 1 626 IPR045215 GO:0003723|GO:0009451
Mtr3g3020 629 Gene3D Tetratricopeptide repeat domain 365 462 IPR011990 GO:0005515
Mtr3g3020 629 Gene3D Tetratricopeptide repeat domain 166 263 IPR011990 GO:0005515
Mtr3g3020 629 Gene3D Tetratricopeptide repeat domain 26 165 IPR011990 GO:0005515
Mtr3g3020 629 Pfam Pentatricopeptide repeat domain 208 257 IPR002885 -
Mtr3g3020 629 Pfam PPR repeat family 110 153 IPR002885 -
Mtr3g3020 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Mtr3g3020 629 Gene3D Tetratricopeptide repeat domain 264 361 IPR011990 GO:0005515
Mtr3g3020 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3020 Mtr-Chr3 44111828 44114173 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3020 103 628 Glycoside Hydrolase AT3G49170 31.285 2.76e-83 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3020 - - gmx:100819993 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3020 3 44111828 44114173 Mtr3g3020 3 44111828 44114173 ECH