Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3019 ATGAGTGATCGCCGATTACCCATTCGTTCCTATGGCAGTAAAATGTCGCTGCTTCTGCGTCGAACCAACTCCCCCACCACGAACCACCACCACCCACCCACCACCACCACCATCACCTTCACCACCGCCACCCAAGTTGAAGTAATCCAATCAATCCTCAACTGTCTAAAATCTGGCCACATCCAAAAAGCCGCATCCATTCTCTTTGACTTCCCACTACCCTTCCCTCACTCTCTCTACGCCCATTTCTTCCGTCACTGTCGCTCCCCAAAATCCATCGCCGCTGCCCATAAAGTCGAGTTCCACTTAGTTGCCACCACTCGCAATCCACCTATATTCCTCCGCAACCGTGCACTTGAAGCTTATGCGAAATGCTCCTCTCTTCATGATGCACAGGAACTGTTTGATGAAATGCCTCAACGAGATGGTGGGTCATGGAATGCTTTGATTACTGCTTATTCTCGATTGCGGTATCCAGATGAAGCGATTTCTTTGTTTCTTTGGATGAATAAGGATGGTGTTCGCGCCAATAACATCACATTTGCCAGTGTTCTTGGGTCGTGTGCTGATGTTTATGAGCTTTCTCTGTCACAACAGGTTCACGGGCTTGTTGTGAAATTTGGTTTTTCGAGCAATGTGATAATTGGGAGTGCTCTTGTTGATGTTTATGCTAAATGTGGGATTATGGTTTATGCTCGCAGGATGTTTCATGAAATTCCTCGTCCAAATGCTGTTACTTGGAATGTTATTGTAAGACGGTATCTTGATGTTGGTGATGCAAAGGAAGCTGTTTTGTTGTTCACGCGCATGTTTTCTGATGGAGTTAAGCCGTTGAATTTCACATTCTCTAATGCTCTTGTTGCTTGTTCTAGTATGCATGCACTTGAGGAAGGGATGCAAATTCATGGGGGGGTTGTGAAATGGGGACTTCATGAGGATACTGTTGTTTCGAGCTCGCTAATCAATATGTATGTCAAGTGTGGTGAATTGGAGAATGGTTTTCGGGTTTTTCATCAGCTTGGTTCGAAAGATTTAGTGTGTTGGACTTGCATTGTGTCAGGGTATGCAATGAGTGGGAAAACTTGGGACGCAAGAAAGCTTTTTGATCAGATGCCTGTACGAAATGTGATATCGTGGAATGCTATGTTGGCTGGATATACCCGATTCTTTAAATGGTCTGAGGCATTAGATTTTGTTTGTTTGATGCTTGACACTGTAAAGGACTTGGACCATGTCACTCTTGGTTTGATGATAAATGTGTCTGCTGGCCTTTTGGATCATGAAATGGGGAAACAGCTTCATGGATTTGTCTATCGACATGGTTTCCACTCAAACCTTATGGTTGGCAATGCCATTCTTGACATGTATGGTAAATGTGGGAACTTGAACAGTGCCCGAGTTTGGTTTAACCTGATGAGTAATTGGCGTGACAGGGTTTCTTGGAATGCTTTATTGGCCAGTTGTGGCCTTCATCATTCAAGCGAACAAACACTGACAATGTTTTCAGAGATGCAATGGGAGGCAAAACCAAGCAAGTATACTTTTGGAACCCTTTTGGCAGCATGTGCAAATACTTATTCGCTACACCTCGGCAAGCAAATTCATGGATTTATCATTAGACATGAATTTCAGATAGATAGTGTAATCAGGACTGCTTTGATTTACATGTACTGTAAATGCTACTGTCTTGAGTATGCTGTTGAGATTCTGAAAGGGGCGGTTTCTAGGGACGTGATAATGTGGAATACCTTAATTTTGGGATGTTGTCACAATCATAGGGGAAGAGATGCACTTGAACTTTTTGGGATAATGGAAGCAGAAGGCATCAAGCCAGACCGTGTGACCTTTGAGGGCATTCTTCTTGCTTGTGTTGAAGAAGGCCTTGTTGAGTTTGGCACTCAATGCTTCGAGTCTATGAGCAATGAATACGGTGTCCTGCCTTGGTTGGAGCATTATGGCTGCATGATTGAACTCTATAGTCGGCATGGATACATGGATGAGCTCGAGAGTTTTATGAAAACAATGACAATAGAGCCTACTCTTCCCATGTTGGAACGAGCCCTTGATGCTTGTCAGAAAAATGACTCCCCAATACTGGGAAAATGGATTGCAAAAAAAATTCATGAATTTGAACATTGA 2139 0.4353 MSDRRLPIRSYGSKMSLLLRRTNSPTTNHHHPPTTTTITFTTATQVEVIQSILNCLKSGHIQKAASILFDFPLPFPHSLYAHFFRHCRSPKSIAAAHKVEFHLVATTRNPPIFLRNRALEAYAKCSSLHDAQELFDEMPQRDGGSWNALITAYSRLRYPDEAISLFLWMNKDGVRANNITFASVLGSCADVYELSLSQQVHGLVVKFGFSSNVIIGSALVDVYAKCGIMVYARRMFHEIPRPNAVTWNVIVRRYLDVGDAKEAVLLFTRMFSDGVKPLNFTFSNALVACSSMHALEEGMQIHGGVVKWGLHEDTVVSSSLINMYVKCGELENGFRVFHQLGSKDLVCWTCIVSGYAMSGKTWDARKLFDQMPVRNVISWNAMLAGYTRFFKWSEALDFVCLMLDTVKDLDHVTLGLMINVSAGLLDHEMGKQLHGFVYRHGFHSNLMVGNAILDMYGKCGNLNSARVWFNLMSNWRDRVSWNALLASCGLHHSSEQTLTMFSEMQWEAKPSKYTFGTLLAACANTYSLHLGKQIHGFIIRHEFQIDSVIRTALIYMYCKCYCLEYAVEILKGAVSRDVIMWNTLILGCCHNHRGRDALELFGIMEAEGIKPDRVTFEGILLACVEEGLVEFGTQCFESMSNEYGVLPWLEHYGCMIELYSRHGYMDELESFMKTMTIEPTLPMLERALDACQKNDSPILGKWIAKKIHEFEH* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3019 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 577 611 IPR002885 -
Mtr3g3019 712 Pfam PPR repeat family 145 189 IPR002885 -
Mtr3g3019 712 Pfam PPR repeat family 577 623 IPR002885 -
Mtr3g3019 712 Gene3D Tetratricopeptide repeat domain 196 270 IPR011990 GO:0005515
Mtr3g3019 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Mtr3g3019 712 Pfam PPR repeat 119 141 IPR002885 -
Mtr3g3019 712 Pfam PPR repeat 245 275 IPR002885 -
Mtr3g3019 712 Pfam PPR repeat 346 375 IPR002885 -
Mtr3g3019 712 Pfam PPR repeat 318 343 IPR002885 -
Mtr3g3019 712 Pfam PPR repeat 450 473 IPR002885 -
Mtr3g3019 712 Pfam PPR repeat 651 675 IPR002885 -
Mtr3g3019 712 Pfam PPR repeat 479 505 IPR002885 -
Mtr3g3019 712 Pfam PPR repeat 377 403 IPR002885 -
Mtr3g3019 712 Gene3D Tetratricopeptide repeat domain 427 527 IPR011990 GO:0005515
Mtr3g3019 712 TIGRFAM PPR: pentatricopeptide repeat domain 145 175 IPR002885 -
Mtr3g3019 712 TIGRFAM PPR: pentatricopeptide repeat domain 579 612 IPR002885 -
Mtr3g3019 712 TIGRFAM PPR: pentatricopeptide repeat domain 245 277 IPR002885 -
Mtr3g3019 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Mtr3g3019 712 PANTHER OSJNBA0006B20.8 PROTEIN 36 710 - -
Mtr3g3019 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Mtr3g3019 712 Gene3D Tetratricopeptide repeat domain 272 424 IPR011990 GO:0005515
Mtr3g3019 712 Gene3D Tetratricopeptide repeat domain 45 195 IPR011990 GO:0005515
Mtr3g3019 712 Gene3D Tetratricopeptide repeat domain 528 711 IPR011990 GO:0005515
Mtr3g3019 712 PANTHER OS07G0578800 PROTEIN-RELATED 36 710 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3019 Mtr-Chr3 44102639 44105232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3019 52 711 Glycoside Hydrolase AT3G49170 27.827 2.47e-81 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3019 - - gmx:100775626 1005.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3019 3 44102639 44105232 Mtr3g3019 3 44102639 44105232 ECH