Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3005 ATGGCATACTTAGAGGGAATAAGAGAGTCACAAAGAGCTCGTGGTCCAGCCACAATACTAGCCATTGGTACTGCAACTCCAGTCAATTGCATTTACCAATCTGATTTTACTGATTATTACTTTCGAGTTACCAAAAGCGAACACATGACTCAACTCAAGGCCAAATTGAAGCGTATATGTGAGAAGTCAATGATAAAGAAACGTTACATACACCTAACTGAAGAAATTCTAAAAGAACACCCCAACATATCCACTTACGAAGAACCATCCCTCAACGTACGCCAAGACATATTAGTTGAAGAAGTACCAAAGCTAGGCGAAAAAGCAGCATTAAAAGCCATAAAAGAATGGGGAAGACCAAAATCAGAGATAACCCATCTCATATTTTGTTCAACTTCTGGTGTTGACATGCCTGGTGCTGATTATCAACTCATCAAACTCTTGAATCTAAATCCATCCACTAAAAGGTTCATGTTATACCACCAAGGTTGTTATGCTGGTGGAACCGTTCTTCGTCTTGCCAAAGATCTAGCTGAGAATAACATTGGTGCACGTGTCCTCGTTGTGTGTTCTGAAATAACTGTTGTTACTTTTCGTGGGCCCAATGAAACACACTTGGATTCTTTAGTTGGACAAGCACTTTTTGGTGATGGTGCTTCGTCTGTGATCGTTGGATCAAATCCCAACACAACACTTGAACGTCCATTATTTCATCTTGTTTCTGCTTCTGAAACGATTCTACCAAACTCTGAAGGTGCTATTGAAGGACACTTGCGTGAAGTGGGACTCACTTTTCATTTGAAAGATAATGTTCCAAGTTTGATTGGTGAGAATATTGAGAAGAGTCTAGAAGAAACTTTTCATCCATTGGGAATTACTGATTGGAATTCTTTGTTTTGGGTAACACACCCCGGCGGTCCTGCAATAATCAAGAGGATTGAAGAAACGGTTGGGTTGAATTCAGATAAACTAAATGCAACTAAACATGTTTTGAGTGAGTATGGAAACATGTCAAGTGCTTGTGTGATATTTATATTGGATGAGATGAGAAGAAGGTCTATGGAAGAGGGGAAAACAACAACTGGTGAAGGACTTAAATGGGGTGTTTTGTTTGGATTTGGTCCTGGCTTGACCATGGAAACCATTGCTTTGCATAGCGCCAACATAGACCATGGTTACTAA 1182 0.3993 MAYLEGIRESQRARGPATILAIGTATPVNCIYQSDFTDYYFRVTKSEHMTQLKAKLKRICEKSMIKKRYIHLTEEILKEHPNISTYEEPSLNVRQDILVEEVPKLGEKAALKAIKEWGRPKSEITHLIFCSTSGVDMPGADYQLIKLLNLNPSTKRFMLYHQGCYAGGTVLRLAKDLAENNIGARVLVVCSEITVVTFRGPNETHLDSLVGQALFGDGASSVIVGSNPNTTLERPLFHLVSASETILPNSEGAIEGHLREVGLTFHLKDNVPSLIGENIEKSLEETFHPLGITDWNSLFWVTHPGGPAIIKRIEETVGLNSDKLNATKHVLSEYGNMSSACVIFILDEMRRRSMEEGKTTTGEGLKWGVLFGFGPGLTMETIALHSANIDHGY* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3005 393 PIRSF PKS_III 3 389 IPR011141 GO:0009058|GO:0016747
Mtr3g3005 393 Gene3D - 1 235 IPR016039 GO:0016746
Mtr3g3005 393 Pfam Chalcone and stilbene synthases, C-terminal domain 239 386 IPR012328 -
Mtr3g3005 393 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Mtr3g3005 393 Pfam Chalcone and stilbene synthases, N-terminal domain 7 228 IPR001099 -
Mtr3g3005 393 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Mtr3g3005 393 PANTHER CHALCONE SYNTHASE 8 4 389 - -
Mtr3g3005 393 CDD CHS_like 16 384 - -
Mtr3g3005 393 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 4 389 IPR011141 GO:0009058|GO:0016747
Mtr3g3005 393 Gene3D - 236 392 IPR016039 GO:0016746
Mtr3g3005 393 SUPERFAMILY Thiolase-like 1 231 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3005 Mtr-Chr3 43869255 43871594 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3005 K00660 K13232 nnu:104591893 614.379