Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2990 ATGGAGGAGTTACCGGAGTGCCCAGTGTGTCTTCAAAACTACGACGACGAAAACGCGATTCCTCGAGTACTCTCATGCGGCCATACAATTTGTGAAGCTTGTCTTGTACATCTTCCACCGCGTTTTCCAAACACAATTCGTTGCCCCGCTTGTACTCAACTCGTTAAATATTCTCCCAATCAAGGCCCTTCTTCTCTTCCCAAAAACATCGATCTTCTCAGAATCTCCCTCCAACAACCACAACACTCTTCATCATCACAAAAATCGAATCAACGGTCCTCAATCAACGATGAATATGCTTATTCCTCTAAATTCTGGTCTGATGAGTTTTACGCTGCTTGGAAGGATTGGATTCTTCCTCACGATGCTGTTTCGGTTACCGAGGATGGTGTTGGTAGGTTTAATTCGAGTTCTAAAGGTAGGGTTTGCTTTGGAGTTAACCGTACGGTGAGTTTAGCTCCGATTGTTACTTTGTCTTCGGTTACTGATTCCAAGTTTAAGTTTAGTTATGTTGCTTGGGTTATCAAGTGTTTGGAGGGGATGAATGAGGTTGTGGGAGAGGGGTTAGGTTTGATTCTAGAAGCTTCTGTGAGGCAGAGTAGGTTGTGTAGGGTTTATGGGTTGTGGAGTGAGGTTGTTGGTGGTAGTTTGTATTTGGTGTGTGAGAGGCAATGTGGTAGGGTTTTGGAGAAATTTGGTGGATTGATGAATGAGGGTGGTTTGGATTCGGATAAAGATGTTTTTTATAGTTTTGCAATGATTGCTAAGGGAGTTATTGAAGCTGTGATTGGTTTGAATTTGGAAGGTTTGGTTGCTGGATGTTTGGGAATTTCGTGTTTCTGTTTTGATGAGCTTGGTGGGGTTTGTATTGATTTGAATGAAGTGTTGCTGATGGGAAGAAAGATTATGGATCAGGTTTCTGGTGGCACGGATGATGAACCGTCACACGAATCAATGTGTACTGAATGTTTGGATTTAGAGAATGAGCTTTTTGTTAGCCCCGAGGTTTTGTCTAAGTTTTTGAACAAGAGGGTTGTTAATCCAGAGAGTGGGGATTCGAGATATCCAATTGGGTATGGCTCGGATGTATGGTCGTTGGCTTGTGTGTTGCTGCGGCTTCTTATTGGAAACGAACTCCCTCAGATTACCTTTGAAATGAGTGAAGGGAATGGTTTTGATATTTCGGCTAGTTATATTTCTTGGGTGGAGAAAGTTAGTTCTGTTTTGGAAGAAAAAATTGGCTTTGAATACCTATCACTTAAGCAGACTCTTTGCAAGTGTTTGGACATCAATCCGGAAAATCGTCCAGATGTTGTGGATCTAAGGAAATCCATTCAGGATTTGTTAGTCAAACACCAATTTGTTTTTTTGGGTAATTCGGAGCTTACAGTAAAGAGGAACAACACAGGTCACCCTGTAACTCTTGCCAAGCTGTGTCAGTTGCTCGAGGAAAGTTCTAAGGACCCGAGAGAACACGAGTTGCAGGCAAAAGAAGATGGTGGTCAACCTAATATTCTTCAAGGTGCGGAAAATATATCTGATGAAGAATTCACTGCTAGCTTATCTCAAGGAATGATTGAGCTTAAAGATCTGCAAGGCCATCTTGGTTGTATCACTGGATTAGCTGTAGGAGGGGGATATCTGTTTAGCTCCTCTTTTGATAAAACTGTCCGTGTATGGTCCTTGCAGGACTTTTCTCATTTACACACGTTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGTTTATGTTGACGACGAAGAACAATTGTGTATAAGCGGTGACAGTGGTGGGGGCATATTTGTCTGGGGGATTGATGCACCTCTTAGTCAAGATCCCTTGAGGAAATGGTATGAGCAGAAGGATTGGCGCTTTAGTGGTATCCATTCCTTGACTGCTTTTGGAAATCTTCTCTACACTGGAAGTGGAGATAGAACAATCAAAGCTTGGTCATTGAAGGATGGAACTTTGATGTGCACAATGGATGGCCACAAATCTGTAGTTTCCACACTTTCGGTATGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGAACCGTCCGATTGTGGAGTCTTAATGATCATATCCCGTTGGCGGTGCTAGGGGAAGATCTTCCTGGAGAGATAAAGTCTATCCTGGCTATTACTGCCGGTAGGGATTTGCTGGTTGCAGCATATGAGAATGGTTGCATAAAGGTCTGGAGAAATGACGTGTTCCTGAGTTCCAAAACATTGCATAATGGTGCCATTTTTGCTATGAGTCTGCAGGGAAAATGGCTTTATACTGGAGGTTGGGACAAAAATGTTAATATACAGGAGTTATCAGGAGATGAGTTAGAACTGACCGTCAACACATTTGGATCCATTCCTTCCGGTTCTGTTGTGACAGCTATATTATGCAGCCAAGGAAAACTTTATGTTGGATATGGTGACAAGTCTATCAAGGAAAATCTTGGTCGCATTCATAAGACTTTCACTGACTTCACCAGCTTGAACCACTGGGTCGTTAGTGACTACTTCCGTCTGGTGGACTCAGTTAATGCATTCGAGCCTCGGATTCAGGCGTTATCCGATGAGCAGTTGGCTGCCAAAACCGAGGAGTTTCGCCTAAGACTCAAGCGAGGGGAGACACTCGCAGATATCCAAGCTGAAGCATTTGCTGTTGTTCGTGAGGCTGCCAGAAGAAAACTTGGAATGCGCCATTTTGATGTTCAGATTATCGGTGGAGCTGTGCTGCATGATGGGTCCATTGCTGAGATGAAAACGGGAGAGGGAAAAACCTTAGTTTCCACGCTAGCAGCATATCTTAATGCCCTGACCTCTGAGGGTGTTCATGTTGTAACTGTCAACGATTATTTAGCTCAACGTGATGCTGAATGGATGGGGCGCGTTCATCGTTTCTTAGGTCTTTCTGTTGGTCTTATTCAGAAAGGGATGAATTCTGAAGAGCGGAGATTCAACTATAGATGTGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACTTGAGAGACAATCTTGCTGGAAATAGTGAACAGCTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCTATTGTTGATGAGGTAGATTCAGTCCTGATAGACGAGGGAAGAAATCCGTTGTTAATCAGTGGTGAGGCTAGTCAAGATGCTGCACGGTACCCTGTTGCTGCAAAAGTAGCTGAATTGCTTATACATGACATTCATTACAAAGTGGAACTCAAAAATAATTCGGTGGAGTTGACCGAGGAAGGAATTACTCTTGCTGAAATGGCTCTTGAAACCAATGACCTTTGGGATGAAAATGATCCCTGGGCTAGATTTGTGATGAATGCTTTAAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATTGTCAGAGATGGAAAGGCTTTAATTATAAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAAGCTGTGGAGGCAAAGGAATGTTTGAAGATTCAGGCAGATTCTGTTGTTGTGGCACAAATCACATACCAATCATTATTCAAGCTGTATCCAAAATTGTCAGGAATGACTGGAACTGCAAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCAGACACCAGTCATTGAAGTGCCGACAAATCTTCCTAATATTCGTAAAGACTTGCCTATTCAAGCATTTGCTACTGCTCGAGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAAGATATGTTTAGACAAGGGCGTCCTGTCTTGGTTGGGACAACTAGTGTAGAAAATTCTGAACTTTTGGCTGGTCTGCTTAGGGAATGGAATATTCCGCATAATGTTCTGAATGCTCGACCCAAGTATGCTGCGAGAGAAGCTGAAATTGTTGCACAAGCAGGACGGAAACATGCCATTACAATATCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGGAATTATAGAGGACAGTGTAGTTTCTTTTTTGACACGGGAGGACCCAAATAGTGTACATGCCAGTGAGGCCATTTCAGAAAAGATGCTTCCAAAGATAAAGGTGGGATCATCATCATTAGCCTTATTGGCTAGGACAGCCTTAATGGCAAAATATGTATCGAAAAGTGAGAGTAAAAGTTGGACATATCAGAAGGCTATATCTTTTATCTTGGAGTCTATTGAGATGAGTCTTTCATATGGTTCGGAAGAGCTAGAGAAGCTTGCCAATGAAGAATCTGAGATGTACCCACTTGGTTCAACATTAGCACTTGCATATCTGTCAGTTTTAAAGGATTGTGAAGAACACTGTTTGCTTGAAGGATCTGAGGTCAAAAGGGTTGGGGGCCTTCATGTGATTGGTACATCTTTACATGAGTCCAGGAGAATAGACAACCAGCTTCGTGGCAGAGCAGGAAGGCAGGGGGATCCGGGGTCAACACGATTTATGGTCAGCTTGCAGGATGAGATGTTTCAAAAGTTCAATTTTGATACTGAATGGGCTGTCAGACTTATATCAAAAATTACAAACGACGAGGATCTGCCAATTGAAGGTGGTGCCATTGTGAAACAGCTCTTGGCATTGCAAATCAATGCAGAAAAGTTCTTCTTCGGCATAAGAAAAAACCTCGTTGAGTTTGATGAAGTATTGGAGGTGCAACGAAAACATGTTTATGATCTAAGGCAGTTAATCTTAATAGGAGATGATGAAAGCTGTTCCCAACACATATTACAGTACATGCAAGCAGTGGTGGATGAGATTGTCTTCAGCAACATTGATCCTGTTAAGCATCCTCGAAGTTGGGGTTTGAGTAATCTCTTGAAAGAGTTCAAGACAATTGGTGGAAAGCTGTTGCATGAATCATTTGGAGGGATTAATGATGACACTTTACTAAATTCACTTGGGCAACTGAATGAAGTGAAATCAGTCGATGTTGTCAACTTTTGCCTTCCAAATTTGCCAGCACCTCCAAATGCTTTCAGGGGAATTCGCAGGAAGAGCTCTTCATTAAGACGATGGCTTGCTATTTGCACCGATGATTTAATTGAGAATGGAAAGTATCGGACAACTTCTAATCTCCTTCGTAAGTATCTTGGAGATTTTCTGATCGCTTCGTATTTAGATGTTGTTGAAGAGTCTGGTTATGACGAGAGACATGTAAAAGAGATTGAGAGAGCTGTTCTTTTGAAAACTCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATCGACTCAGCTCTGCGGTGAATGTTAGGAGCTTCGGCCACAGAAATCCTCTGGAAGAATACAAAATTGATGGTTGTCGGTTTTTCATCTCAATGCTCAGTGCAACTCGAAGGTTTACTGTAGAAGCACTCTTACGGCATTGGACGTCTCCAATGGAATCCCAAGAATTATTTTTATAA 5433 0.4221 MEELPECPVCLQNYDDENAIPRVLSCGHTICEACLVHLPPRFPNTIRCPACTQLVKYSPNQGPSSLPKNIDLLRISLQQPQHSSSSQKSNQRSSINDEYAYSSKFWSDEFYAAWKDWILPHDAVSVTEDGVGRFNSSSKGRVCFGVNRTVSLAPIVTLSSVTDSKFKFSYVAWVIKCLEGMNEVVGEGLGLILEASVRQSRLCRVYGLWSEVVGGSLYLVCERQCGRVLEKFGGLMNEGGLDSDKDVFYSFAMIAKGVIEAVIGLNLEGLVAGCLGISCFCFDELGGVCIDLNEVLLMGRKIMDQVSGGTDDEPSHESMCTECLDLENELFVSPEVLSKFLNKRVVNPESGDSRYPIGYGSDVWSLACVLLRLLIGNELPQITFEMSEGNGFDISASYISWVEKVSSVLEEKIGFEYLSLKQTLCKCLDINPENRPDVVDLRKSIQDLLVKHQFVFLGNSELTVKRNNTGHPVTLAKLCQLLEESSKDPREHELQAKEDGGQPNILQGAENISDEEFTASLSQGMIELKDLQGHLGCITGLAVGGGYLFSSSFDKTVRVWSLQDFSHLHTFRGHENKVMALVYVDDEEQLCISGDSGGGIFVWGIDAPLSQDPLRKWYEQKDWRFSGIHSLTAFGNLLYTGSGDRTIKAWSLKDGTLMCTMDGHKSVVSTLSVCDEVLYSGSWDGTVRLWSLNDHIPLAVLGEDLPGEIKSILAITAGRDLLVAAYENGCIKVWRNDVFLSSKTLHNGAIFAMSLQGKWLYTGGWDKNVNIQELSGDELELTVNTFGSIPSGSVVTAILCSQGKLYVGYGDKSIKENLGRIHKTFTDFTSLNHWVVSDYFRLVDSVNAFEPRIQALSDEQLAAKTEEFRLRLKRGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQKGMNSEERRFNYRCDITYTNNSELGFDYLRDNLAGNSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASQDAARYPVAAKVAELLIHDIHYKVELKNNSVELTEEGITLAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKECLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQTPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEDMFRQGRPVLVGTTSVENSELLAGLLREWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLARGIIEDSVVSFLTREDPNSVHASEAISEKMLPKIKVGSSSLALLARTALMAKYVSKSESKSWTYQKAISFILESIEMSLSYGSEELEKLANEESEMYPLGSTLALAYLSVLKDCEEHCLLEGSEVKRVGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEGGAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILIGDDESCSQHILQYMQAVVDEIVFSNIDPVKHPRSWGLSNLLKEFKTIGGKLLHESFGGINDDTLLNSLGQLNEVKSVDVVNFCLPNLPAPPNAFRGIRRKSSSLRRWLAICTDDLIENGKYRTTSNLLRKYLGDFLIASYLDVVEESGYDERHVKEIERAVLLKTLDCFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRFTVEALLRHWTSPMESQELFL* 1811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2990 1810 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 907 1070 IPR014001 -
Mtr3g2990 1810 SUPERFAMILY WD40 repeat-like 526 815 IPR036322 GO:0005515
Mtr3g2990 1810 Gene3D - 1050 1170 - -
Mtr3g2990 1810 ProSiteProfiles Trp-Asp (WD) repeats profile. 661 700 IPR001680 GO:0005515
Mtr3g2990 1810 SMART ring_2 7 51 IPR001841 -
Mtr3g2990 1810 SUPERFAMILY Helical scaffold and wing domains of SecA 1529 1808 IPR036266 -
Mtr3g2990 1810 SMART SecA_PP_bind_2 1049 1160 IPR011130 GO:0016020|GO:0017038
Mtr3g2990 1810 Gene3D Transferase(Phosphotransferase) domain 1 300 455 - -
Mtr3g2990 1810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Mtr3g2990 1810 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 570 IPR001680 GO:0005515
Mtr3g2990 1810 Gene3D Helical scaffold and wing domains of SecA 1528 1639 - -
Mtr3g2990 1810 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 816 1809 - -
Mtr3g2990 1810 Gene3D - 509 610 IPR015943 GO:0005515
Mtr3g2990 1810 ProSiteProfiles Zinc finger RING-type profile. 7 52 IPR001841 -
Mtr3g2990 1810 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 661 693 - -
Mtr3g2990 1810 Pfam SecA preprotein cross-linking domain 1056 1160 IPR011130 GO:0016020|GO:0017038
Mtr3g2990 1810 Gene3D - 841 1217 IPR027417 -
Mtr3g2990 1810 Pfam RING-type zinc-finger 7 49 IPR027370 -
Mtr3g2990 1810 PRINTS SecA protein signature 881 905 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mtr3g2990 1810 PRINTS SecA protein signature 919 933 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mtr3g2990 1810 PRINTS SecA protein signature 935 945 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mtr3g2990 1810 PRINTS SecA protein signature 988 1008 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mtr3g2990 1810 PRINTS SecA protein signature 1141 1163 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mtr3g2990 1810 PRINTS SecA protein signature 1178 1195 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mtr3g2990 1810 PRINTS SecA protein signature 1215 1228 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mtr3g2990 1810 PRINTS G protein beta WD-40 repeat signature 548 562 IPR020472 -
Mtr3g2990 1810 PRINTS G protein beta WD-40 repeat signature 638 652 IPR020472 -
Mtr3g2990 1810 PRINTS G protein beta WD-40 repeat signature 678 692 IPR020472 -
Mtr3g2990 1810 ProSiteProfiles Trp-Asp (WD) repeats profile. 635 660 IPR001680 GO:0005515
Mtr3g2990 1810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1219 1506 IPR027417 -
Mtr3g2990 1810 SMART WD40_4 524 561 IPR001680 GO:0005515
Mtr3g2990 1810 SMART WD40_4 736 773 IPR001680 GO:0005515
Mtr3g2990 1810 SMART WD40_4 610 651 IPR001680 GO:0005515
Mtr3g2990 1810 SMART WD40_4 564 604 IPR001680 GO:0005515
Mtr3g2990 1810 SMART WD40_4 654 691 IPR001680 GO:0005515
Mtr3g2990 1810 SMART WD40_4 694 735 IPR001680 GO:0005515
Mtr3g2990 1810 CDD RING-HC_TRIM32_C-VII 6 52 - -
Mtr3g2990 1810 Pfam SecA Wing and Scaffold domain 1523 1797 IPR011116 GO:0016020|GO:0017038
Mtr3g2990 1810 Hamap Protein translocase subunit SecA [secA]. 820 1801 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mtr3g2990 1810 CDD SF2_C_secA 1222 1493 IPR044722 -
Mtr3g2990 1810 Pfam SecA DEAD-like domain 832 1203 IPR011115 GO:0005524|GO:0016020|GO:0017038
Mtr3g2990 1810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 828 1217 IPR027417 -
Mtr3g2990 1810 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 816 1809 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mtr3g2990 1810 SUPERFAMILY Protein kinase-like (PK-like) 200 454 IPR011009 -
Mtr3g2990 1810 SMART SecA_DEAD_2 825 1204 IPR011115 GO:0005524|GO:0016020|GO:0017038
Mtr3g2990 1810 ProSiteProfiles Protein kinase domain profile. 123 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g2990 1810 SUPERFAMILY Pre-protein crosslinking domain of SecA 1048 1169 IPR036670 GO:0016020|GO:0017038
Mtr3g2990 1810 CDD DEXDc_SecA 860 1216 - -
Mtr3g2990 1810 ProSiteProfiles SecA family profile. 821 1525 IPR014018 -
Mtr3g2990 1810 ProSitePatterns SecA family signature. 1304 1319 IPR020937 GO:0006605|GO:0006886|GO:0016020
Mtr3g2990 1810 Gene3D - 611 836 IPR015943 GO:0005515
Mtr3g2990 1810 ProSitePatterns Zinc finger RING-type signature. 26 35 IPR017907 -
Mtr3g2990 1810 Gene3D - 1219 1525 IPR027417 -
Mtr3g2990 1810 Gene3D Helical scaffold and wing domains of SecA 1666 1798 - -
Mtr3g2990 1810 TIGRFAM secA: preprotein translocase, SecA subunit 846 1620 IPR000185 GO:0005524|GO:0006605|GO:0006886
Mtr3g2990 1810 Pfam WD domain, G-beta repeat 657 691 IPR001680 GO:0005515
Mtr3g2990 1810 Pfam WD domain, G-beta repeat 528 561 IPR001680 GO:0005515
Mtr3g2990 1810 SUPERFAMILY RING/U-box 4 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2990 Mtr-Chr3 43694696 43723170 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2990 546 763 Acyl Lipid Metabolism Gene Families AT3G18860 29.333 4.87e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2990 K03070 - gmx:100793437 2919.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2990 3 43694696 43723170 Mtr3g2990 3 43694696 43723170 ECH