Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2988 ATGATTAACATTTCCAACCATAGAAATTTTTCACTCCTCAAACGCGTTTCATTCGCCAAATTGTTAACCACAAACGAACCAATTCAAGACATTGAAGAATTAACCGAAACAGTATCCAAGGTTATGATGTCTTCTCCTGCAATCACACTCGACACTGCTCTTAATCAATCGGGCGTTAGGGTTTCTCCTGAATTAGTCGAAACCGTTCTCAAACGGTTCGAAAATGCCGGTATGTCCGCGTTTCGGTTCTTCGAATGGGCTGAAAAGCAGAGAAATTACTCACATTCCATCAGAGCTTATCACTTGATGATTGAGTCTTTGGCAAAGATTAGACAGTATCAGATTATGTGGGAGCTTGTTAATTCAATGAGGAAAAAGGGTATGGTAAATGTTGAAACTTTTTGTATTATTATGAGAAAATATGCTAGGGCTCATAAAGTTGATGAAGCTGTTTATACTTTTAATGTTATGGATAAATATGATACGCCGCAGAATCTTGCTGCTTTCAATGGTTTGTTGAGTGCTTTGTGTAAGTCTAGGAATGTTAGGAAGGCTCAAGAGATTTTTGATAGTATGAAGGGTCGGTTTGAGCCGGATTCGAAGACTTATAGTATATTGCTTGAAGGGTGGGGGAAGGAACCGAATCTTCCTAAAGCGAGAGAGGTTTTCGGTGAGATGGTTTCTGCGGGGTGTAATCCTGATATTGTTACTTACGGTATAATGGTTGATATTCTTTGTAAGGCTGGTAGGGTTGATGAAGCTGTTGAGGTTGTTAAGGAGATGGATGATAATGATTGCAGGCCGACGTCTTTTATTTACAGTGTTCTTGTTCATACTTATGGAGTGGAGAGTCGGATTGAGGATGCTATTGATATGTTCATGGAGATGGAAAAGAATGGAATTGCGGCAGATGTTGTGGTGTATAATGCCTTGATTGGTGCTTTTTGTAAGGCAAACAAATTGAAAAATGTGCATCGGGTGTTAAAAGAGATGGAAAGCAATGGGATTGCTCCGAATTCAAGGACATGTAACGTTATCATGAGTAGTTTGATTAGCCAGGGAGAGACTGATAAAGCTTTTAGTGTCTTTCGTCGGATGATCAAGCTGTGTGAACCTGATGCTGACACCTATACAATGCTGATAAAGATGTTTTGCGAGAGAAATGAAGTGGATATGGCTCTGAAAATATGGAAGTATATGAAGTCAAAACAGTTTGTCCCAAGCTTGCACACCTTTTCGGTCCTTATCAATGGGCTGTGTGCAAAGGGCAATGCTATGAAAGCTTGTATTTTACTGGAAGAGATGATAGAGAAGGGAATTCGACCATCACGTATTACTTTTGGGAAGTTAAGACAGTTACTTATAAAGGAAGGGAGAGATGATGTACTCAAATTTCTGCATGAGAAAATAAATATGCTTGTTAAGGAACCTTTGTATGATTAA 1443 0.3915 MINISNHRNFSLLKRVSFAKLLTTNEPIQDIEELTETVSKVMMSSPAITLDTALNQSGVRVSPELVETVLKRFENAGMSAFRFFEWAEKQRNYSHSIRAYHLMIESLAKIRQYQIMWELVNSMRKKGMVNVETFCIIMRKYARAHKVDEAVYTFNVMDKYDTPQNLAAFNGLLSALCKSRNVRKAQEIFDSMKGRFEPDSKTYSILLEGWGKEPNLPKAREVFGEMVSAGCNPDIVTYGIMVDILCKAGRVDEAVEVVKEMDDNDCRPTSFIYSVLVHTYGVESRIEDAIDMFMEMEKNGIAADVVVYNALIGAFCKANKLKNVHRVLKEMESNGIAPNSRTCNVIMSSLISQGETDKAFSVFRRMIKLCEPDADTYTMLIKMFCERNEVDMALKIWKYMKSKQFVPSLHTFSVLINGLCAKGNAMKACILLEEMIEKGIRPSRITFGKLRQLLIKEGRDDVLKFLHEKINMLVKEPLYD* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2988 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Mtr3g2988 480 Pfam PPR repeat family 304 350 IPR002885 -
Mtr3g2988 480 Pfam PPR repeat family 372 420 IPR002885 -
Mtr3g2988 480 Pfam PPR repeat family 165 209 IPR002885 -
Mtr3g2988 480 Gene3D Tetratricopeptide repeat domain 47 193 IPR011990 GO:0005515
Mtr3g2988 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Mtr3g2988 480 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 477 - -
Mtr3g2988 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 369 IPR002885 -
Mtr3g2988 480 SUPERFAMILY TPR-like 97 396 IPR011990 GO:0005515
Mtr3g2988 480 Pfam PPR repeat 230 261 IPR002885 -
Mtr3g2988 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Mtr3g2988 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Mtr3g2988 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Mtr3g2988 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Mtr3g2988 480 Pfam PPR repeat 272 301 IPR002885 -
Mtr3g2988 480 Pfam PPR repeat 99 127 IPR002885 -
Mtr3g2988 480 Pfam PPR repeat 133 159 IPR002885 -
Mtr3g2988 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Mtr3g2988 480 PANTHER OS03G0761300 PROTEIN 10 477 - -
Mtr3g2988 480 TIGRFAM PPR: pentatricopeptide repeat domain 133 160 IPR002885 -
Mtr3g2988 480 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Mtr3g2988 480 TIGRFAM PPR: pentatricopeptide repeat domain 342 368 IPR002885 -
Mtr3g2988 480 TIGRFAM PPR: pentatricopeptide repeat domain 202 235 IPR002885 -
Mtr3g2988 480 TIGRFAM PPR: pentatricopeptide repeat domain 376 408 IPR002885 -
Mtr3g2988 480 TIGRFAM PPR: pentatricopeptide repeat domain 272 304 IPR002885 -
Mtr3g2988 480 TIGRFAM PPR: pentatricopeptide repeat domain 306 339 IPR002885 -
Mtr3g2988 480 TIGRFAM PPR: pentatricopeptide repeat domain 236 269 IPR002885 -
Mtr3g2988 480 TIGRFAM PPR: pentatricopeptide repeat domain 168 194 IPR002885 -
Mtr3g2988 480 Gene3D Tetratricopeptide repeat domain 333 401 IPR011990 GO:0005515
Mtr3g2988 480 Gene3D Tetratricopeptide repeat domain 263 332 IPR011990 GO:0005515
Mtr3g2988 480 Gene3D Tetratricopeptide repeat domain 194 262 IPR011990 GO:0005515
Mtr3g2988 480 Gene3D Tetratricopeptide repeat domain 402 472 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2988 Mtr-Chr3 43677129 43685273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2988 43 461 Glycosyltransferase AT1G05670 23.529 2.74e-38 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2988 - - gmx:100790096 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2988 3 43677129 43685273 Mtr3g2988 3 43677129 43685273 ECH