Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2970 ATGCCAGCTTCTCCTTCAGATAACCGAGCCAAATGGAGGAAACGGAAGAGAGAATCACGAATCAACCAGCGTCAACAGAAGCTTCAAGAGGAAGAAGAAGACGACGACGAAGAAAATCCCAATGCCGACGAAGACCACGACCGCGACTACGATTCCGACGACCAACACCACCCTAATTCTCAACCTCAACAAGAAATTGAAGTTCTCTCTGATCACGCTGTTCAGATTTCGCAGTTTCCAATGGTAATTAAGCGTGCTGTCAATCGTCCACACTCTTCTGTAACCGCAATTGTTGCTCTTGAACGAGCTATGGAGTTGGGAGATAGTAAAGCTCAGCTTCAGAACACTCCGTTTCTGGAGAATGTTTCACATGGACAGCTTCAAGCGCTTTCGGCTGTTCCTTCTGATAGTCTTGCTTTGGATCAGGATCGTGCTGAGTCTTCTTATGTTATTACTCCGCCTCCGATTTTGGAAGGACGTGGTGTTGTTAAACGGTTTGGAAGCAGGGTTCTTGTGCTTCCAATGCATTCAGATTGGTTTTCACCTGGAACAGTACACCGGCTAGAGAGACAAGCAGTGCCGCATTTCTTTTCAGGGAAATCTCAGGATCTTACTCCTGAGAAGTATATGGAATGTAGGAATTATATTGTTGCACTATATATGGAGGAACCGGGGAAGAGGATTACCGCGTCTGATTGCCAGGGATTGCAGGTTGGAGTTGGTCATGAAGATTTGACTCGAATTGTTAGGTTTCTTGATCATTGGGGAATTATAAATTACTGTGCTCGGACGCCAAGTCATGAGCCTCCAAATGCCGTGTCTTGTTTGAAGGAGGATACTAGTGGAGAGATCCGTGTGCCGTCAGAGGCCTTGAAGTCTATAGATAGTTTGATTAAATTTGATAAGACAAACTGCAAGCTCAAAGCAGAAGAAATTTATTCACCGTTGACAATGCATAGTGGTGATGTCCCTGATCTGGACAGCAGAATAAGAGAGCACCTGTCTGAAAATCATTGCAATTATTGTTCTTGTCCTCTTCCTGCTGTATACTATCAGTCTCAAAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGATGGAAAATTTGTCGTTGGTCATTCAAGTATAGATTTTTTAAGGGTGGATTCATCAAGGGATTATGGTGAACTAGATGTTGAAAGTTGGACTGATCAAGAAACTTTGTTGCTGCTCGAAGCAATGGAGATTTACCATGAGAATTGGAATGAAATTGCTGAGCACGTTGGTACCAAATCAAAAGCACAATGCATTCTTCATTTTCTTCGTCTACCCATGGAAGATGGAAAATTGGAAAATATCAATGTTCCAAGCATGTCTGTGTCATCCAATGTGATGAATAGAGATGATAATGGAAGATCACACCATTACTCAAACGGAGATTCGGCAGGACCTGTACATCATATCAGAGATTCCGACAGCCGCCTGCCTTTTGCCAATTCTGGAAATCCTGTTATGGCTCTGGTTGCCTTTTTAGCCTCTGCGGTTGGACCAAGAGTAGCAGCTTCTTGTGCTCACGCGGCATTATCAGTAATGTCGGAGGATAATACTGGCTCCCAGACTGAATCATCAGGACATGATAATAGGACAAATCCAGAAAACACACATTCTAGAGATGGTGGCTCTCGAGGAGAAACTGCAATTTCAAATAATCATAATGAGGATAAGGCAAAAGCACCTTGTTCGCGGGAGCAAAGTGAGGGTAGGACAACCCCACTCTCTGCTGAAAAAGTTAAAGATGCAGCTAAAGCAGGCCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCCGATCACGAAGAACGAGAAATCCAGAGATTATGTGCTAATATAATTAACCATCAGTTGAAAAGATTGGAATTGAAGCTGAAACAGTTTGCAGAAATTGAAACATTGTTGATGAAGGAATGCGAGCAAGTGGAAAGAGCAAAACAAAGGTTTGCCGCAGAACGCACCCGCGTTATATCAGCACGTTTTGGAACTGCAGGAACTACACCTGCAATGAATGCATCAGGTGTTGGTCCTTCAATGGCTAGTAATGGCAATAATAGGCAACAAATGATCTCTGCTTCTCCCTCACAGCCCAGCATCTCAGGGTATGGTAACAACCAGCCAATTCATCCACACATGTCCTTTGCCCAAAGACCTTCAATGTTTGGGTTGGGGCAAAGGTTGCCCCTATCTATGATACAACAATCACAATCAGCTTCTTCAGCTCCCATGTTCAATGCCCCTAGTAATGTGCAGCCTGGTACCAATCATCCATTGTTGAGGCCTGTGTCAGGAACTAATTCTGGTTTAGGATAA 2349 0.4359 MPASPSDNRAKWRKRKRESRINQRQQKLQEEEEDDDEENPNADEDHDRDYDSDDQHHPNSQPQQEIEVLSDHAVQISQFPMVIKRAVNRPHSSVTAIVALERAMELGDSKAQLQNTPFLENVSHGQLQALSAVPSDSLALDQDRAESSYVITPPPILEGRGVVKRFGSRVLVLPMHSDWFSPGTVHRLERQAVPHFFSGKSQDLTPEKYMECRNYIVALYMEEPGKRITASDCQGLQVGVGHEDLTRIVRFLDHWGIINYCARTPSHEPPNAVSCLKEDTSGEIRVPSEALKSIDSLIKFDKTNCKLKAEEIYSPLTMHSGDVPDLDSRIREHLSENHCNYCSCPLPAVYYQSQKEVDILLCTDCFHDGKFVVGHSSIDFLRVDSSRDYGELDVESWTDQETLLLLEAMEIYHENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSVSSNVMNRDDNGRSHHYSNGDSAGPVHHIRDSDSRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALSVMSEDNTGSQTESSGHDNRTNPENTHSRDGGSRGETAISNNHNEDKAKAPCSREQSEGRTTPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFAAERTRVISARFGTAGTTPAMNASGVGPSMASNGNNRQQMISASPSQPSISGYGNNQPIHPHMSFAQRPSMFGLGQRLPLSMIQQSQSASSAPMFNAPSNVQPGTNHPLLRPVSGTNSGLG* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2970 782 ProSiteProfiles SWIRM domain profile. 171 269 IPR007526 GO:0005515
Mtr3g2970 782 MobiDBLite consensus disorder prediction 744 782 - -
Mtr3g2970 782 Pfam SWIRM-associated region 1 598 674 IPR032451 -
Mtr3g2970 782 ProSiteProfiles Myb-like domain profile. 396 439 IPR001005 -
Mtr3g2970 782 SUPERFAMILY Homeodomain-like 396 447 IPR009057 -
Mtr3g2970 782 Gene3D - 177 264 IPR036388 -
Mtr3g2970 782 MobiDBLite consensus disorder prediction 45 60 - -
Mtr3g2970 782 PANTHER SWI/SNF COMPLEX-RELATED 56 781 - -
Mtr3g2970 782 MobiDBLite consensus disorder prediction 1 65 - -
Mtr3g2970 782 MobiDBLite consensus disorder prediction 457 483 - -
Mtr3g2970 782 MobiDBLite consensus disorder prediction 527 542 - -
Mtr3g2970 782 CDD SANT 396 438 IPR001005 -
Mtr3g2970 782 Pfam Myb-like DNA-binding domain 396 438 IPR001005 -
Mtr3g2970 782 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 56 781 - -
Mtr3g2970 782 SUPERFAMILY Homeodomain-like 170 267 IPR009057 -
Mtr3g2970 782 Pfam SWIRM domain 174 260 IPR007526 GO:0005515
Mtr3g2970 782 Gene3D - 394 443 - -
Mtr3g2970 782 ProSiteProfiles Zinc finger ZZ-type profile. 334 388 IPR000433 GO:0008270
Mtr3g2970 782 SMART sant 393 441 IPR001005 -
Mtr3g2970 782 MobiDBLite consensus disorder prediction 527 592 - -
Mtr3g2970 782 ProSiteProfiles SANT domain profile. 392 443 IPR017884 -
Mtr3g2970 782 Coils Coil 14 34 - -
Mtr3g2970 782 MobiDBLite consensus disorder prediction 30 44 - -
Mtr3g2970 782 MobiDBLite consensus disorder prediction 563 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2970 Mtr-Chr3 43562234 43569154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2970 339 435 EF-hand Containing Proteins AT3G07740 33.962 3.16e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2970 K11649 - gmx:100780440 1236.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2970 3 43562234 43569154 Mtr3g2970 3 43562234 43569154 ECH