Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2939 ATGGAGAAGATCAACAGCAATGATCAAGAAGATTCAAAACCTGTGGTTCTCATCACAGGTTGCAGCGGAGGAGGAATAGGTAACGCGCTTGCACGCTCCTTCGCAGCCAACAGCTGCAATGTGGTTGCAACCAGCAGGTCACGTTCTACCATGGCGGATTTGGATCAAGACCCTAAATTCTTCCTTCAAGAACTCGATGTTCAGTCCGATGAAAGCGTGAACAGAGTTGTGAATACTGTTTTGGATAAATTTGGTCGCATCGATGTTCTTGTTAATAACGCTGGTGTTCCTTGTACAGGCCCACTTGCTGAGGTTCCTCTCTCTGCGATACAAAACACGTTTAATACTAACGTCTTTGGTTCCATGAGAATGGTCCAGGCTGTGGTTCCTCACATGGCAACTAGGAAACAGGGAAAGATTGTTAACGTTGGAAGTGTTACTGCGTTAGCCTCTGGACCTTGGGGCGGTACTTATAGTGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATACATTGAGATTAGAACTTGGACATTTTGGAATTGATGTTGTGAATGTTGTCCCTGGAGCTGTGAAGTCAAATATGGGAAATTCCGGCATAGCCATCTACGACCGCATGCCAGAGTGGAAATTGTTCAAACCATTTGAAGCAGTAATCCGAGAGAGAGCTCTACTGTCTCGGAAGTTAAGACAAACCCCTACAGACGAGTTTGCTAAACACACCATAGCTGCTATCCTAAGGAAGAAACCACCTGCATGGTTCTCTTATGGCAATTATTCTACTGTCATGGCTATTATGTACTATTTACCTCTCTGTGTTAGAGACTTTCTTTTGAAGAAAGCAATGAAATAA 852 0.4401 MEKINSNDQEDSKPVVLITGCSGGGIGNALARSFAANSCNVVATSRSRSTMADLDQDPKFFLQELDVQSDESVNRVVNTVLDKFGRIDVLVNNAGVPCTGPLAEVPLSAIQNTFNTNVFGSMRMVQAVVPHMATRKQGKIVNVGSVTALASGPWGGTYSASKAALHALTDTLRLELGHFGIDVVNVVPGAVKSNMGNSGIAIYDRMPEWKLFKPFEAVIRERALLSRKLRQTPTDEFAKHTIAAILRKKPPAWFSYGNYSTVMAIMYYLPLCVRDFLLKKAMK* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2939 283 Gene3D - 13 269 - -
Mtr3g2939 283 CDD 17beta-HSD-like_SDR_c 15 260 - -
Mtr3g2939 283 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Mtr3g2939 283 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Mtr3g2939 283 PRINTS Glucose/ribitol dehydrogenase family signature 132 148 IPR002347 -
Mtr3g2939 283 PRINTS Glucose/ribitol dehydrogenase family signature 158 177 IPR002347 -
Mtr3g2939 283 PRINTS Glucose/ribitol dehydrogenase family signature 179 196 IPR002347 -
Mtr3g2939 283 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 145 173 IPR020904 GO:0016491
Mtr3g2939 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Mtr3g2939 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 IPR002347 -
Mtr3g2939 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 IPR002347 -
Mtr3g2939 283 PANTHER BNAANNG04690D PROTEIN 11 281 - -
Mtr3g2939 283 Pfam short chain dehydrogenase 15 197 IPR002347 -
Mtr3g2939 283 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 269 IPR036291 -
Mtr3g2939 283 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 11 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2939 Mtr-Chr3 43261866 43263721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2939 10 195 Acyl Lipid Metabolism Gene Families AT3G55310 32.323 1.12e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2939 - - mtr:MTR_3g087850 563.533