Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2904 ATGGGTGGTTCTGGTTCTAAACTCGAGAAGGCTCTCGGTGATAATTTCCCTGAAGGAGAACATTACTTTGGCCTTGAGAATTTCGGCAATACTTGTTATTGCAACAGCGTTTTGCAGGCTCTATACTTCTGTGTTCCGTTTCGAGAACAATTGCTACAGTATTATGGAAAAAACAAAAACATAACAGACGCGGAGGAAAATCTTTTGACTTGCTTAGCTGAACTATTTTCACAGATAAGTTCCCAGAAGAGGAAGACAGGTGTGATTGCTCCCAAACGATTTGTACAGAGGTTGAAAAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGACGCCCATGAGTTCTTGAACTATTTGTTAAATGAACTTGTTGACATTCTGGAGAGAGAGGCCCATGCTGAAAAAGATGATCAAGGTACATTACTACCTTCTGAGAAGATTGCAAATGGACCAAAGAGTGGTTTAGCTAATGGTGCTAAAAAAGCACCTTTAGCTACTTGGGTGCACAAAAACTTTCAGGGAATACTTACCAATGAGACAAGGTGCTTGCAATGTGAAACAGTTACGGCTAGGGATGAAACATTTTTCGACTTGAGTCTTGATATTGAACAAAATAGTTCAATTACAAGTTGTTTGAAAAATTTCAGTTCAACTGAGACATTGAATGCGGAAGACAAATTTTTCTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAGACCCCCACGTGTCTTGGTCATTCATCTTAAGCGGTTTAAGTACATGGAACAGCTGGGCCGCTACAAGAAGTTGTCTTACCGTGTGGTCTTTCCCCTTGAACTCAGGTTGAGTGATACAGATGAAGAAGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTACATGTTGGGAGTGGGCCCAACCACGGGCATTATGTCTGTCTTGTAAAAAACCATAACCACTGGTTATGTTTTGACGATGAAACTGTCGAGGTGGTTGATGAAGCTTCAGTGCAGACATTCTTTGGGTCAACACAGGACTTCAACAATAATACAGACCATGGTTACATTTTGTTCTATGAGAGCATTAACAGAAACTAG 1101 0.406 MGGSGSKLEKALGDNFPEGEHYFGLENFGNTCYCNSVLQALYFCVPFREQLLQYYGKNKNITDAEENLLTCLAELFSQISSQKRKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNELVDILEREAHAEKDDQGTLLPSEKIANGPKSGLANGAKKAPLATWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKRPPRVLVIHLKRFKYMEQLGRYKKLSYRVVFPLELRLSDTDEEADIEYSLFAVVVHVGSGPNHGHYVCLVKNHNHWLCFDDETVEVVDEASVQTFFGSTQDFNNNTDHGYILFYESINRN* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2904 366 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 294 312 IPR018200 GO:0004843|GO:0006511
Mtr3g2904 366 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Mtr3g2904 366 CDD Peptidase_C19G 24 361 - -
Mtr3g2904 366 SUPERFAMILY Cysteine proteinases 21 362 IPR038765 -
Mtr3g2904 366 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 364 - -
Mtr3g2904 366 Gene3D Cysteine proteinases 6 362 - -
Mtr3g2904 366 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 364 - -
Mtr3g2904 366 Pfam Ubiquitin carboxyl-terminal hydrolase 23 360 IPR001394 GO:0004843|GO:0016579
Mtr3g2904 366 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 363 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2904 Mtr-Chr3 42957299 42962355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2904 24 334 Miscellaneous Gene Families AT4G31670 28.527 2.27e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2904 K11842 - gmx:100305765 667.537