Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2892 ATGACATCTTCAGTGATTGAGGGTGGACACGATGAGGCTATACATGAGCCTTCGGATTTGATCGTAGCAAATATGAATCCTACGGTTGGAAATCTTTCACTTCCTAATGAAACATTCTTAAAAGCTGCAATCTCTCTCAAGGATGAGGTGGTGGAAGTGAATTGGAATCGGAGAGAAGTGATTGATCCAACGGTGTATACAGGTTTGCTTGGTACGGCTTTCACTTGCCTGAGATCGTACGAGGTTACCGGTTGCCATAAGGACTTGGTGTTAAGTTCGGAGATCATCGACACATGTGCCACTGTTGCACGTGACTCCCTCAGACACGTGACTTTTCTATGTGGTAGAGGAGGCCTATACGCGCTTGGAGCTGTGGTTGCTAATTACATGGGGGACCTCCAAAAGCGTGACCTGTTTTTGGGTCTATTCATGGAGGTGGCAAACGAGAGAGCCCTCCCTGTTGGACCCGAGGAAGGCGGTTTTGGGATGTCATATGATCTTCTATACGGACGAGCTGGATTCCTATGGGCTGCATTGTTCCTAAACAAGCACCTAGGAGAAGATACGGTGTCCAAAGACATTCTAATGCCTATTATTGATGCAGTACTGGCCGGCGGTAGAGCAGGAGCGTCTGATATCAAAGACTGTCCATTGATGTATAGATGGCATGGGACAAGGTACTTAGGTGCAGCAAATGGCCTTGCTGGTATTCTTCATGTGCTCATTCATTTTCCACTTCCAAGTGAATATGCTGAAGATGTCAAGGGAACTTTGAGATATTTAATAAGTAAAAGATTCCCTCACAGTGGAAATTACCCATCAAGTGAAGGGAATCCAAGAGATAAGTTAGTGCAGTGGAGTCATGGAGCAACTGGGATGGCTATTACATTGTCTAAAGCAGCACAGGTGTTTCCAAATGATAGAGAACTACGAGATGCAGCAATAGAAGCCGGAGAAGTTGTATGGAAAAATGGATTGGTGAAGAAAGTGGGACTTGCCGATGGCGTATCTGGAAATGCCTATGCTTTTCTTTCACTCTACAAACTAACCAAAGATAGTATATATGAAGAGAGGGCGAAATCATTCTCTTGTTTCTTGTATGATAATGCTAGAGCTCTTGCAGTTGAAGGGCAAGTTGTTGCGGATGGCAATGGCTACTCTCTCTTCCATGGACTTGCTGGGACAGCATGTCTTTGGTTTGATCTGATTGCACCTGATAACTCTAGGTTTCCAGGTTATGAATTATAG 1248 0.4471 MTSSVIEGGHDEAIHEPSDLIVANMNPTVGNLSLPNETFLKAAISLKDEVVEVNWNRREVIDPTVYTGLLGTAFTCLRSYEVTGCHKDLVLSSEIIDTCATVARDSLRHVTFLCGRGGLYALGAVVANYMGDLQKRDLFLGLFMEVANERALPVGPEEGGFGMSYDLLYGRAGFLWAALFLNKHLGEDTVSKDILMPIIDAVLAGGRAGASDIKDCPLMYRWHGTRYLGAANGLAGILHVLIHFPLPSEYAEDVKGTLRYLISKRFPHSGNYPSSEGNPRDKLVQWSHGATGMAITLSKAAQVFPNDRELRDAAIEAGEVVWKNGLVKKVGLADGVSGNAYAFLSLYKLTKDSIYEERAKSFSCFLYDNARALAVEGQVVADGNGYSLFHGLAGTACLWFDLIAPDNSRFPGYEL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2892 415 Gene3D - 23 415 IPR012341 GO:0005975
Mtr3g2892 415 PRINTS Eukaryotic LanC-like protein family signature 195 210 IPR020464 -
Mtr3g2892 415 PRINTS Eukaryotic LanC-like protein family signature 263 278 IPR020464 -
Mtr3g2892 415 PRINTS Eukaryotic LanC-like protein family signature 301 322 IPR020464 -
Mtr3g2892 415 PRINTS Eukaryotic LanC-like protein family signature 401 415 IPR020464 -
Mtr3g2892 415 PANTHER LANC-LIKE PROTEIN GCL1 17 415 - -
Mtr3g2892 415 SUPERFAMILY LanC-like 41 415 - -
Mtr3g2892 415 Pfam Lanthionine synthetase C-like protein 61 415 IPR007822 -
Mtr3g2892 415 SMART LANC_like_2 59 415 IPR007822 -
Mtr3g2892 415 PANTHER LANC-LIKE PROTEIN 17 415 - -
Mtr3g2892 415 CDD euk_LANCL 65 411 - -
Mtr3g2892 415 PRINTS LanC-like protein superfamily signature 62 80 IPR007822 -
Mtr3g2892 415 PRINTS LanC-like protein superfamily signature 165 180 IPR007822 -
Mtr3g2892 415 PRINTS LanC-like protein superfamily signature 227 243 IPR007822 -
Mtr3g2892 415 PRINTS LanC-like protein superfamily signature 283 303 IPR007822 -
Mtr3g2892 415 PRINTS LanC-like protein superfamily signature 330 343 IPR007822 -
Mtr3g2892 415 PRINTS LanC-like protein superfamily signature 385 402 IPR007822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2892 Mtr-Chr3 42848460 42852172 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2892 - - gmx:100785406 714.531