Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2860 ATGAATCCTTTATGCTGCATTGCTCCGGTTTCGATCGATCGAGACCGGAGTACTCCGGTGGTGTCCAAGTCAAACTCTCAGTGTCAATTAGGGTTAGATTCATCGATCAGAACTGTGAACTGTGCTTCTAAATCGAGTTTTTCAACTCATGATTCATCGTTAGCAGGGGATTCGGTGAAATCCTCTTCGGCTGGTTTGAATCATGATGAAGATGATGCTGTGAATGAAGTTCGTGATTCGAAGGTGTTGAATGGTGGTGGTGTAGCTGGGAGTGTGGCGGGGATATTGTACAAGTGGGTGAATTATGGTAAAGGTTGGAGGTCGAGGTGGTTTGTGCTGGAAGATGGTGTGCTTTCTTATTATAAGATTCATGGACCGGATAAGATCTTGATGAGTCCTGCTAAGGATAGGAGTGTTAGGGTGATCGGTGAGGAGTCGGCGAAGTTTGTGAAGAAGGCGAATTGGAACGTGAATCGAGGTAATGGAGTAGTTGGAGGTGGAGCTACTAAGCAATGCAAGCCCTTTGGTGAGATACATTTGAAGGTTTCTTCTGTTCGCTTCAGCAAGTCTGATGACAAGCGGCTTTCCGTATTTACTGGGACAAAAACTCTTCATTTGAGGTGTGTATCTAGAGAAGACAGAGCCATGTGGATTGAAGCCCTGCAGTCCGCGAAAGATCTTTTTCCCAGGGCTCTGACAAGCAGCGATCTTGCAACTCCAGAAGATATTGTAGTTTCGACAGAGAAGCTGCGATCCAGATTGTCACAGGAAGGCATAAATGAAGAAATCATTAATGACTGCGAGTCTATTATGCTCTCGGAAGTCTCATATCTTCAAGGCAAGTTGAAGTTTCTTCAGCAGAAACATGTTATGTTGTTGGACACCTTAAAACAACTGGAGACGGAGAAAATAGAGTTGGAAACTACTGTAGTAGATGAAACAAAGGAACGTGAGTCATATTGCACACAAGGGAATAGAAGATATAGTGATTTCTATTCTGTTATGTCGGAAGGCAGTGCTACAGATTCAGTAGTAGATAATGAAAGTCAAGATGGAGCAGATGCTGAAACAGATGATGAAGATGGAACATATTTTGATACAAATGAGACGTTATATTCAGACGCCCTAAGAAGTGCTTCCTATCGAAGTAGAGAAGGTACAGGAAGTGCCAGTATATATGATAGAGATTATATTCTCCATGATGGTTTGCATGGGTTTGAGATGGCAATCAAAGATATAAGCTATCCTTATGTCAAAAGAAGGGATAATTTACCAGAACCAAAAGAGAAAGAGAAACCTGTTGGCCTGTGGTCAATTATTAAAGACAATATTGGGAAGGATCTTTCTGGAGTTTGTCTCCCTGTTTATTTTAATGAACCACTCTCTTCATTGCAAAAGTGTTTTGAAGACCTCGAGTACTCAAACCTAGTTGATAGAGCATTGGAATGGGGAAAGCAGGGGAATGAATTGATGAGAATTCTAAATATTGCAGCTTTTGCTGTGTCCGGCTATGCGTCCACCGAAGGTCGACAGTGTAAACCTTTCAACCCTCTGCTTGGGGAGACTTACGAAGCTGACTATCCAGATAAAGGAGTTAAATTTTTTTCAGAGAAGGTTAGTCATCATCCAATGGTTGTTGCTTGTCACTGTGAGGGAAGAGGATGGAAGTTCTGGGCAGACTCCAATTTGAAAGGAAAGTTCTGGGGGCGTTCTATTCAGTTAGATCCTGTGGGTGTTCTCACCCTACAGTTTGAGGATGGTGAAACATTTCAGTGGAGTAAGGTCACTACTTCCATATACAATATTATACTAGGTAAAATTTATTGTGACCACTATGGTACTATGCACATCAAGGGCAGCGGAAACTACTCTTGCAAACTTAAGTTCAAAGAGCAATCTATCATAGACCGTAATCCACATCAGGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCAATGTTAATTGGGAAGTGGGATGAAGCAATGTATTATGTACTCGGGGATCCAACTACAAAGCCCAAAGGTTATGATCCTATGACAGAAGCTGCATTATTGTGGGAAAAGGACAACTATGTCCCCAAGACAAGATACAACCTCTCTCCCTTCGCAATTTCCTTGAATGAAATAATGCCTGGTTTATTGGTGAAGTTGCCTCCAACCGACTCAAGGTTGAGACCAGATCAAAGACATTTGGAAAATGGAGAGTATGAATATGCAAATGCAGAGAAACTAAGGCTTGAACAGTTACAGAGACAGGCAAGAAAGATGCAAGAAAGAGGATGGCAGCCCAGATGGTTTAAGAAGCATGATGATGGTTCTTACCGATACATGGGTGGCTATTGGGAGGCAAGAGAAAAGAACAATTGGGATGGAATCTCTGATATATTCGGACAAGGCTGTGATTTGCCTTCATGTTCTGAAGAGATTGTATCCTACTGA 2451 0.4219 MNPLCCIAPVSIDRDRSTPVVSKSNSQCQLGLDSSIRTVNCASKSSFSTHDSSLAGDSVKSSSAGLNHDEDDAVNEVRDSKVLNGGGVAGSVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPAKDRSVRVIGEESAKFVKKANWNVNRGNGVVGGGATKQCKPFGEIHLKVSSVRFSKSDDKRLSVFTGTKTLHLRCVSREDRAMWIEALQSAKDLFPRALTSSDLATPEDIVVSTEKLRSRLSQEGINEEIINDCESIMLSEVSYLQGKLKFLQQKHVMLLDTLKQLETEKIELETTVVDETKERESYCTQGNRRYSDFYSVMSEGSATDSVVDNESQDGADAETDDEDGTYFDTNETLYSDALRSASYRSREGTGSASIYDRDYILHDGLHGFEMAIKDISYPYVKRRDNLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSNLVDRALEWGKQGNELMRILNIAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGVKFFSEKVSHHPMVVACHCEGRGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFEDGETFQWSKVTTSIYNIILGKIYCDHYGTMHIKGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLIGKWDEAMYYVLGDPTTKPKGYDPMTEAALLWEKDNYVPKTRYNLSPFAISLNEIMPGLLVKLPPTDSRLRPDQRHLENGEYEYANAEKLRLEQLQRQARKMQERGWQPRWFKKHDDGSYRYMGGYWEAREKNNWDGISDIFGQGCDLPSCSEEIVSY* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2860 816 Pfam Oxysterol-binding protein 436 789 IPR000648 GO:0008289
Mtr3g2860 816 MobiDBLite consensus disorder prediction 46 63 - -
Mtr3g2860 816 Gene3D - 732 798 - -
Mtr3g2860 816 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 805 IPR000648 GO:0008289
Mtr3g2860 816 MobiDBLite consensus disorder prediction 46 71 - -
Mtr3g2860 816 SMART PH_update 90 228 IPR001849 -
Mtr3g2860 816 Gene3D - 89 228 IPR011993 -
Mtr3g2860 816 Coils Coil 743 763 - -
Mtr3g2860 816 Pfam Pleckstrin homology domain 94 223 - -
Mtr3g2860 816 ProSiteProfiles PH domain profile. 89 226 IPR001849 -
Mtr3g2860 816 MobiDBLite consensus disorder prediction 349 364 - -
Mtr3g2860 816 Coils Coil 282 316 - -
Mtr3g2860 816 MobiDBLite consensus disorder prediction 339 364 - -
Mtr3g2860 816 Gene3D - 521 688 - -
Mtr3g2860 816 SUPERFAMILY Oxysterol-binding protein-like 430 801 IPR037239 -
Mtr3g2860 816 CDD PH_ORP_plant 95 230 - -
Mtr3g2860 816 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 1D 2 805 - -
Mtr3g2860 816 SUPERFAMILY PH domain-like 93 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2860 Mtr-Chr3 42548091 42556419 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2860 K20456 - gmx:100817856 1474.14