Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2849 ATGGATTTGCCAGATTTCTTCCTAGCAGCAACAATCACATTAGGCTTCATCTCCATATGTAAATCTCTATTCCATTTTCTCAACTGGATAAGGATCATGTTCTTGAGACCTCGCAAAAAACTCAAAGACTATGGTTCATGGGCTATAATCACCGGCTCCACCGATGGAATAGGCAAAGCCATGGCTTTTGAATTTGCATCAAAGGGACTCAACATTCTCTTAGTTGGTAGAAACCCTCTTAAACTTGAAGCAACATCAAAAGAGATAATAGATAGAAATTTTGGAAATGTTGAGGTAAAGTTTGTTGTTATAGACATGCAAAATATTAGTGGAGAGGAAATAATGAAAAGAGTAGAAGAAGCAATATATGGTTTAGATGTGGGAATTTTAGTTAATAGTGCTGGTGTGGCTTACCCTTATGCTAGATTTTTTCATGAGGTTGATTTGGATTTGATGGATGCTATTATCAAAGTGAATGTTGAAGGAACAACTTGGATTACAAAAGCTGTGCTTCCTAGTATGATTAAGAAGAGAAAAGGAGCTATTATTAACATTGGTTCTGGTTCCAGTGTTGTACTTCCTTCTTTTCCTCTTGTCACAATTTATGCAGCATCAAAAGCGTATCTTGCAATGTTCTCTGCATGCACCAGTTTGGAATACAAACACCACGGGATTGACATCCAGTGCCAGGCTCCAATGTTTGTCTCAACAAAAATGACATGTGATATGAAGACATCACTTTTTGTTCCAACACCAGATAAATACAGCAAAGCATGCACAAAATGGATTGGCTATGAAAAATTGGTTGTGCCTTACTTCTTTCACAATCTGCAGTCGTTTCTCATAAGGAAAATTCCTGATGTACTCATGGATTCCTATATGCTACGTTTTTTTCTTTACCGGCGTGAAAAAGGACTCATCGACGACTCCCAAATCAAAGGATTAGAAGCATCTTGTAATTCTGAGACAAATCAACATTAG 981 0.3731 MDLPDFFLAATITLGFISICKSLFHFLNWIRIMFLRPRKKLKDYGSWAIITGSTDGIGKAMAFEFASKGLNILLVGRNPLKLEATSKEIIDRNFGNVEVKFVVIDMQNISGEEIMKRVEEAIYGLDVGILVNSAGVAYPYARFFHEVDLDLMDAIIKVNVEGTTWITKAVLPSMIKKRKGAIINIGSGSSVVLPSFPLVTIYAASKAYLAMFSACTSLEYKHHGIDIQCQAPMFVSTKMTCDMKTSLFVPTPDKYSKACTKWIGYEKLVVPYFFHNLQSFLIRKIPDVLMDSYMLRFFLYRREKGLIDDSQIKGLEASCNSETNQH* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2849 326 Gene3D - 41 273 - -
Mtr3g2849 326 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Mtr3g2849 326 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Mtr3g2849 326 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Mtr3g2849 326 PRINTS Glucose/ribitol dehydrogenase family signature 202 221 IPR002347 -
Mtr3g2849 326 PRINTS Glucose/ribitol dehydrogenase family signature 223 240 IPR002347 -
Mtr3g2849 326 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 3 311 - -
Mtr3g2849 326 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Mtr3g2849 326 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 188 IPR002347 -
Mtr3g2849 326 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 221 IPR002347 -
Mtr3g2849 326 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 189 217 IPR020904 GO:0016491
Mtr3g2849 326 CDD 17beta-HSD1_like_SDR_c 45 286 - -
Mtr3g2849 326 PIRSF 11-beta-HSD1 3 307 - -
Mtr3g2849 326 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 307 IPR036291 -
Mtr3g2849 326 PANTHER RH59310P 3 311 - -
Mtr3g2849 326 Pfam short chain dehydrogenase 47 241 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2849 Mtr-Chr3 42442671 42445552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2849 14 313 Lipid Metabolism Gene Families AT1G67730 49.007 2.94e-103 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2849 K10251 - gmx:100816067 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2849 3 42442671 42445552 Mtr3g2849 3 42442671 42445552 ECH