Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2812 ATGTCGCTCGCATCATTCTCCATCATCCGCCACCAACGCACGGTGGCCACCGCCGCCCCTCGACTTCTCCACCACTTCCAAATCTCCGCCAGAAATCAAAACCCTAAACACGAAGCTCCAAGCAAGAATCTCCTCAAAGCAAAACGAACACTCAAAGATTTCTCCTCTCTCGCTCTAATTCTCTCCCGCGAAGAAACTCCCCCTCTCTCCGAATCCCAAGCCGTCGGCGTCGTCGCTTCTTCCCAAGCCAATTTCATGCGCGTAATCGTCCAATCACAACCTTCTGGAACCTTCCAGGACGCTTCTTCCAGAGGAGGAGCTGAACTGTTATGCGTTGTGAGAGCGTTGCTGAAGAAGATAAAGCGTAGGGTTATGGTTGGAGATAAGGTTTTAGTAGGTTCTGTTGATTGGGTTGATCGTAGGGCTATGATTGAGAATGTGTTTCAGAGAAATTCTGAAATGCTTGATCCTCCTGTGGCTAATGTGGATCATTTGCTTGTTCTGTTTTCGCTTGATCAGCCTAAGCTTGAGCCTTTTACGCTAACACGGTTTTTGGTTGAAGCTGAGTCTACTGGGATTCCTCTCACTCTTGCTCTTAACAAGACTGAGCTTGTCGATAAAGAGACCATGGATTCCTGGAAGGCCAGGTTTCGTGGTTGGGGCTACCAGCCAATTTTTTGCAGTGTTGAATCCGGACATAACATTGATCTTCTCGCGTTCCAATTGAGGGATCAAACAACAGTGGTTGTTGGTCCTAGTGGAGTTGGGAAGTCTAGTTTGATCAACGCCCTTAGAAGCAATCCTCGTACTTGTGACACTGCAGATGGGGAGAATTGGTTTGAACCTATTTTAGGTAGCAAGTGGTATGACGACCAGCGAGTTGCAGAGGTTTCAACAAGAAGTGGCAGGGGGAAGCATACTACTCGTCATGTCTCTCTGCTTCCATTATCTGGAGGGGGTTATCTTGCTGATACTCCTGGATTTAACCAGCCTAGTTTACTGAAAGTGACAAAGCAATCTCTTGCACAAACTTTTCCCGAAATCAGGAAAATGCTTAGTGGAAATGAGTCTACAAAATGTTCATTTAACAATTGCTTGCATCTTGGTGAACCTGGCTGCATTGTGAAGGGGGATTGGGAAAGATATTCATTCTATTTTCAACTTCTTGATGAAATTAGAATCAGAGAGGAGTTCCAATTGAGGACATTTGGAACTAAAAGAGAAAGTGATGTAAGGTTAAGGACAGGAAATATGGGTTCTCAGCAAGCAGAGCCACGTTTGGTGCTTAAGAAGCATAGAAGACAGTCTCGGAAGAAGACTAACCAATCAATTTTAGATGATCTTGATGATGACGACAATTTGCTTGATGAGGAGAACGATCCCCTTTTAAATGCTTTGAGGAATGAAAATCCTTAA 1416 0.4492 MSLASFSIIRHQRTVATAAPRLLHHFQISARNQNPKHEAPSKNLLKAKRTLKDFSSLALILSREETPPLSESQAVGVVASSQANFMRVIVQSQPSGTFQDASSRGGAELLCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRAMIENVFQRNSEMLDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTGIPLTLALNKTELVDKETMDSWKARFRGWGYQPIFCSVESGHNIDLLAFQLRDQTTVVVGPSGVGKSSLINALRSNPRTCDTADGENWFEPILGSKWYDDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSGNESTKCSFNNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFGTKRESDVRLRTGNMGSQQAEPRLVLKKHRRQSRKKTNQSILDDLDDDDNLLDEENDPLLNALRNENP* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2812 471 SUPERFAMILY Nucleic acid-binding proteins 75 150 IPR012340 -
Mtr3g2812 471 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 124 267 IPR004881 GO:0003924|GO:0005525
Mtr3g2812 471 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 74 396 IPR004881 GO:0003924|GO:0005525
Mtr3g2812 471 Gene3D - 69 147 IPR012340 -
Mtr3g2812 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 392 IPR027417 -
Mtr3g2812 471 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 151 331 IPR030378 GO:0005525
Mtr3g2812 471 CDD YjeQ_EngC 160 390 IPR004881 GO:0003924|GO:0005525
Mtr3g2812 471 Pfam RsgA GTPase 147 333 IPR010914 GO:0003924|GO:0005525
Mtr3g2812 471 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 63 453 IPR004881 GO:0003924|GO:0005525
Mtr3g2812 471 ProSiteProfiles EngC GTPase domain profile. 160 329 IPR010914 GO:0003924|GO:0005525
Mtr3g2812 471 Gene3D - 148 333 IPR027417 -
Mtr3g2812 471 Gene3D Probable gtpase engc; domain 3 335 397 - -
Mtr3g2812 471 MobiDBLite consensus disorder prediction 411 471 - -
Mtr3g2812 471 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 63 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2812 Mtr-Chr3 42110687 42114450 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2812 K06949 - gmx:100796145 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2812 3 42110687 42114450 Mtr3g2812 3 42110687 42114450 ECH