Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2755 ATGAAGGGTTTATATGTTCTTTTCATGCTAGTTATTGCTTCACATAGCGTGTCTTCTAGAATAACGCCTAATACAGGTTCTACCTTTGATGTTCTTACATATGGTGCCATCGGGGATGGTCAAACCGATGATTCAAATGCTTTTTTAAAAGTATTTAACGATGCATGTGGTACAAGTGAGAGCACCCCATCAATGACCATACCCGAAGGAAAAACATTCTTGTTGCAACCTTTGGTGTTCAAAGGTCCATGCAAATCTACAAACATTATAGTTGAGCTTAAAGGAAATATCACTGCCCCAAAAGACATTGAAAGTTGGAATTTCACAGTTGAGAAACAAAGGAAAATATGGATCCAATTCTCAAAAATAAGTGGCCTTGTTGTCAACGGAGAAGGAAACATTGATGGCCAAGGTTCTCCATGGTGGGACAAGTTTGGTGGTAAAGGTCAAGAAAAGTTTAGGCCAACTGCTCTTCGATTCCTTGATTGTCAAGCTCTAACACTTAGCAACTTGAATCACATGAATAGTCCGAAGAATCATATAAGTGTAGATTCATGCAAAAACGCTTCCATCTTCAATATTCATATAACTGCACCACCAACCAGTCCAAATACAGATGGAATTGATATCTCACAGTCAACCAACATCGCCATTATGAATTCAACCATCGAAACTGGTGACGATTGCATCGCCATTAACAATGGCTCAAGTGTCATCACCATAACCGGTACTTTTTGTGGACCAGGCCACGGGATAAGTGTTGGTAGCCTCGGAAAAGATAATTCATATGCTACGGTAGAAGATGTACGTGTTCAAAATTGCACATTCACCGGAACTTCAAATGGAGGTAGAATCAAGACATTTGAGGGAGGATCTGGATATGCGAGGAACATTACATACGAAGATATCATACTTAATGAAGTGAAGAATCCTGTGATTATTGACCAAGCGTATAACCCTAACGCAGATAGTGCCGTTGAAATTAGTGATGTTACTTACAGCAACATACGAGGAACCTCAGTTGGTGAATATGCAATCGAACTTAAATGTGAACTCAACATCGGTTGCAACAACATTGTTCTCGATCATATTAACATAACTCGTGCCGATGGAGGGAAAGCAGGTGTAGTTTGCGTTGGTGGACATGGAAATTCCTCTTCATGTAATCCAGCTGTCCCTTGTCTTACAAACATTAGTGCTATTTGGTGGTACTAG 1215 0.4 MKGLYVLFMLVIASHSVSSRITPNTGSTFDVLTYGAIGDGQTDDSNAFLKVFNDACGTSESTPSMTIPEGKTFLLQPLVFKGPCKSTNIIVELKGNITAPKDIESWNFTVEKQRKIWIQFSKISGLVVNGEGNIDGQGSPWWDKFGGKGQEKFRPTALRFLDCQALTLSNLNHMNSPKNHISVDSCKNASIFNIHITAPPTSPNTDGIDISQSTNIAIMNSTIETGDDCIAINNGSSVITITGTFCGPGHGISVGSLGKDNSYATVEDVRVQNCTFTGTSNGGRIKTFEGGSGYARNITYEDIILNEVKNPVIIDQAYNPNADSAVEISDVTYSNIRGTSVGEYAIELKCELNIGCNNIVLDHINITRADGGKAGVVCVGGHGNSSSCNPAVPCLTNISAIWWY* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2755 404 ProSitePatterns Polygalacturonase active site. 243 256 IPR000743 GO:0004650|GO:0005975
Mtr3g2755 404 Gene3D - 13 399 IPR012334 -
Mtr3g2755 404 PANTHER - 10 395 - -
Mtr3g2755 404 SMART pbh1 356 380 IPR006626 -
Mtr3g2755 404 SMART pbh1 266 287 IPR006626 -
Mtr3g2755 404 SMART pbh1 186 212 IPR006626 -
Mtr3g2755 404 SMART pbh1 323 350 IPR006626 -
Mtr3g2755 404 SMART pbh1 236 256 IPR006626 -
Mtr3g2755 404 SMART pbh1 213 234 IPR006626 -
Mtr3g2755 404 PANTHER - 10 395 - -
Mtr3g2755 404 Pfam Glycosyl hydrolases family 28 62 369 IPR000743 GO:0004650|GO:0005975
Mtr3g2755 404 SUPERFAMILY Pectin lyase-like 19 396 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2755 Mtr-Chr3 41542649 41545408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2755 26 395 Glycoside Hydrolase AT5G27530 49.468 2.40e-117 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2755 K01184 - qsu:111990272 409.068