Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr3g2730 | ATGGCGAAGAAACGTGTTCCCGATTGGCTCAACAGTCCTATGTGGTCTTCCCCCACCGAACAAAATCGCTTCTCCGCCACTTCTTACCCATCGGAACCTCCTTCTCCACCGCCTGTCACCGTCGTAGAAGATCCTCCCTCAATTCACAATGCCATTACTACTTCACCCCCCTCTTCTTCTTCCTCCTCCGCTTCTACTTCCTCCACCGATGACATGTCCATCTCCCGTCTGGCTCAGTCCCAGTCCCAATTGTTAGCAGAGTTATCTAGGAAGGTTATAGATATGCGTGAATTGAGAAAAATCGCATCTCAAGGAATACCTGATTCTCCTGGTTTACGTTCTACTATCTGGAAGCTTTTGTTAGGGTATCTTCCACCCGATCGGTCCCTTTGGTCCTCTGAATTAGCAAAGAAGAGGTCTCAATACAAACGTTTTAAACAAGACATTCTCATCAATCCTTCAGAAATCACGAGGAGGATGTTCAACTCTGCTAGTTATGATGCTGACGATGTCAAATGTGAGACAAGGGGCATGCTTTCTAGATCACAAATCACTCATGGGGAACATCCTTTGAGTCTTGGCAAGACCAGCATATGGAATCAGTTTTTCCAGGATACCGATATCATAGAGCAGATTGACCGTGATGTAAAGCGTACTCATCCAGATATGCACTTCTTCTGTGGCGATTCTCAATTAGCAAAATCTAATCAGGAGGCTTTAAAGAACATATTAATTATTTTTGCAAAGTTGAACCCAGGTATTAGATACGTTCAAGGGATGAATGAAGTATTGGCTCCTTTATTCTACGTGTTCAAAAATGATCCCGACGAGGAAAATGCAGCCTTTTCTGAAGCCGACACATTCTTTTGTTTTGTTGAACTATTGAGTGGATTCCGAGATAATTTTTGTCAACAACTTGACAATAGTATTGTTGGAATTCGTTCAACTATAACAAGATTGTCTCAGCTTTTGAAAGAACATGATGAAGAACTATGGCGTCATCTTGAGGTCACAACCAAAGTCAACCCCCAATTTTATGCATTTAGGTGGATTACTCTCCTCTTGACTCAGGAATTTGATTTTGCTGATAGCCTTCGTATTTGGGACACCCTTGTCAGTGATCCTGATGGTCCACAGGAGACACTTCTCCGGGTATGCTGTGCAATGCTAATTCTCGTTCGTAGGCGTCTCCTGGCGGGTGATTTCACTTCTAATCTCAAGTTGCTGCAAAGTTATCCTTCTACAAACATTAGTCATTTGCTCCATGTTGCTAACAAGTTACGTGTACAGTCAATCTAA | 1299 | 0.4288 | MAKKRVPDWLNSPMWSSPTEQNRFSATSYPSEPPSPPPVTVVEDPPSIHNAITTSPPSSSSSSASTSSTDDMSISRLAQSQSQLLAELSRKVIDMRELRKIASQGIPDSPGLRSTIWKLLLGYLPPDRSLWSSELAKKRSQYKRFKQDILINPSEITRRMFNSASYDADDVKCETRGMLSRSQITHGEHPLSLGKTSIWNQFFQDTDIIEQIDRDVKRTHPDMHFFCGDSQLAKSNQEALKNILIIFAKLNPGIRYVQGMNEVLAPLFYVFKNDPDEENAAFSEADTFFCFVELLSGFRDNFCQQLDNSIVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFDFADSLRIWDTLVSDPDGPQETLLRVCCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRVQSI* | 433 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr3g2730 | 432 | Gene3D | - | 311 | 431 | - | - | |
| Mtr3g2730 | 432 | MobiDBLite | consensus disorder prediction | 1 | 74 | - | - | |
| Mtr3g2730 | 432 | Gene3D | - | 76 | 131 | - | - | |
| Mtr3g2730 | 432 | SMART | tbc_4 | 102 | 401 | IPR000195 | - | |
| Mtr3g2730 | 432 | PANTHER | YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN | 3 | 430 | - | - | |
| Mtr3g2730 | 432 | ProSiteProfiles | TBC/rab GAP domain profile. | 107 | 375 | IPR000195 | - | |
| Mtr3g2730 | 432 | Pfam | Rab-GTPase-TBC domain | 205 | 396 | IPR000195 | - | |
| Mtr3g2730 | 432 | Gene3D | putative rabgap domain of human tbc1 domain family member 14 like domains | 194 | 303 | - | - | |
| Mtr3g2730 | 432 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 86 | 334 | IPR035969 | - | |
| Mtr3g2730 | 432 | MobiDBLite | consensus disorder prediction | 12 | 29 | - | - | |
| Mtr3g2730 | 432 | PANTHER | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN | 3 | 430 | - | - | |
| Mtr3g2730 | 432 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 312 | 429 | IPR035969 | - | |
| Mtr3g2730 | 432 | MobiDBLite | consensus disorder prediction | 47 | 74 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr3g2730 | Mtr-Chr3 | 41281449 | 41287146 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr3g2730 | K24796 | - | mnt:21404479 | 644.81 |