Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2727 ATGACCGCAAAATTCGATTTAACGTCTGCTTCTGAACCTCACAAGATGTCTGGAGCTACATCTACAACACCTTCTAGTAACCAAAAGCTCTCTAAATTTGGTGCCAAATCTGGATTTGTTATCCCCAAAAACAAGTTATTAGGATCATTGGTCCCCATTATCCGAGGAGCTAAAAAAGACGGGGTCACTGGAGTTGTCAATGAAGAAAGTTCAAAACAAATCGAGAGGAAATCAAGATGGGGACCTGATCCAACACAGGATGCATTTGTCAGGAAGGCTAAGGTTTTGGCATTGCAGATTCGAGTGGACCAAATTTCAAAGATGTTAGAATCAGAAAATCCAGAGATTGTAGACACTCAGAACTCACCATTGGAGGATGAGAATCCAGGTGCAAGCAAGGCTGGTTCTCAAATTAATAGCAAGTCAGAAATGCTAGAACTCGAAAAGCGGGAAGCAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCACCTGGTTTTAAACCATTGTTAAAAGAAGACAATGTTCCTTTGCCTGTCCAAGAATATCCTGGGTACAAATTTGTTGGTCTTATTTATGGGACTGAAGGTGATAATCAGAAGCGACTGGAGAAGGAAACTGGTACCAAGATAAAAATTCATGGAACCAAAGCAGACACAGGAGAGAAAGGTGAAATTAAACCAGGCACTGATGTCCAGTGCGGTTACCAAGAGATGCATGTCAACATATCAGCTGATAGTTTTGATAAAGTGGATGCAGCAATTTCCATCATTGAACTACTAATTTCCTCTGTAACGGGGAATTCAGCTGCTGGTTCCACACCTTCTCTATCTGTTTCTGGGGACACAACTAATGTTCTGAATCAAAACAAAGACACCACTCCTTCTCATGCAATTTCTCTTTCTCTGGAAAACCAGGCTGTGTTTCAACCTGCAACCAATACACAAATGCAAGGAGATCACTTTCAATACTCTGGTTCGTGGTTTTCACCCTTACCATCTCATACCCCTTTATTTGCTTCTTCTGGCACTGTAGTTCCCCCAAATCCACAACACCTTGCTAGAGCACCCCCTTTTCCATCACAAACAATGAGCCCTTCAAGTCTGATTTCAGCTTTTGGTGCTCAACCTCCACCTGTTTCTGGATTCCACCCGTTTATTCCTAATCAGCAGTTTTCTATGCAAGCACCACCACCGACACAAATCTTACAGCACTCACAATGGCCTCAAACAAATCCTTTTGGTCAAGTTGGGCCACCAAGAAATCCTTCTGTAATACGTGCACAGAATTTGTCAGCACCAACAAATGCTTCACTTTCATTTCCAGTTTCTTTAAGCCAACCAACACCAACTGGACAACTCCAGACATCAGTCTCTTCAACGCCTCAACCTTTGTCTGGTATATCGCCGTCACCAATAGCTAACCAGCCATTAACCCCTCACGGCGTATCTACTGGACTGGGTGGAGGACCCGTCAATGTTAAAATGTCTGTAGGTCTCAGCAATATGGGGCCGATGGCTTCACCGGCAGTTCCCCCTACAAGACCTGTTTCTCTCGGTCCACAACCAGATGTTGAATATAAGTCACCCCAGCCAAATATGTTGATGATTCCACGACCTGGCAGTATTCATCCACATCATGCAGGAATGTCACCTAGACCACCATTTTCTTTGGTACCAATGCCAGGAACTGTTCATTCAACTGGAAACCATTTATTAGGGCCTGTTTCATTTCCTTCGCCAAGAATATCCTCTCCACTTCCATTAGCTCAGCAATCAGGAATACCTACTTCTGCCTCTCAATACTCCCACGTAAACCCACTGGCCTCCATGCCTTCAAATTCGGGAAATTTTACCTTTCAAGGACAGAGGCCCAATGCAGACTACTATCAAGCGGTTCCCAGACCAAACAGTCAAGCTACTACTCAGGGTGGTACACAAGAGCCACCTTCCGGTCCACGCCCGCCACCATTTAGGTTTGCTGTGCCTGATCAGCCTCTTCAAAGCTTTCAAAGGACACAAGTCTCCAACCAGCTGGATCCATCTCAAGCTTATGTCTCTGCCGCTCCTTTTGGGGGAAGTTCGGGTTCTGTCTCATTTCCACCCAGACACCCTGCATTCCCATATGCTGGTCAACCTTCACCAAGATCTCAAGTCCCACAAATGGGTATGAGGAACTTCATTCCTGCCCCTCAAATGCAAAATTTGGCCAGTCCTGATGTCCAAAGAGGTATGCACAATCGACAAAGCTATCCTGCTCAGGGAGCATGGCCTCTGAATCAGAAGTTTAGCAACAATCCCTCCTTGGCGTCCGGTAAGCCAGCACATCCTGCAGACCAAATTTATGATCCTTTTTCACCTACATCTGCTGCACCTCCACACCTGAAAGGTAATCCTGGAAAATGA 2412 0.4494 MTAKFDLTSASEPHKMSGATSTTPSSNQKLSKFGAKSGFVIPKNKLLGSLVPIIRGAKKDGVTGVVNEESSKQIERKSRWGPDPTQDAFVRKAKVLALQIRVDQISKMLESENPEIVDTQNSPLEDENPGASKAGSQINSKSEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEDNVPLPVQEYPGYKFVGLIYGTEGDNQKRLEKETGTKIKIHGTKADTGEKGEIKPGTDVQCGYQEMHVNISADSFDKVDAAISIIELLISSVTGNSAAGSTPSLSVSGDTTNVLNQNKDTTPSHAISLSLENQAVFQPATNTQMQGDHFQYSGSWFSPLPSHTPLFASSGTVVPPNPQHLARAPPFPSQTMSPSSLISAFGAQPPPVSGFHPFIPNQQFSMQAPPPTQILQHSQWPQTNPFGQVGPPRNPSVIRAQNLSAPTNASLSFPVSLSQPTPTGQLQTSVSSTPQPLSGISPSPIANQPLTPHGVSTGLGGGPVNVKMSVGLSNMGPMASPAVPPTRPVSLGPQPDVEYKSPQPNMLMIPRPGSIHPHHAGMSPRPPFSLVPMPGTVHSTGNHLLGPVSFPSPRISSPLPLAQQSGIPTSASQYSHVNPLASMPSNSGNFTFQGQRPNADYYQAVPRPNSQATTQGGTQEPPSGPRPPPFRFAVPDQPLQSFQRTQVSNQLDPSQAYVSAAPFGGSSGSVSFPPRHPAFPYAGQPSPRSQVPQMGMRNFIPAPQMQNLASPDVQRGMHNRQSYPAQGAWPLNQKFSNNPSLASGKPAHPADQIYDPFSPTSAAPPHLKGNPGK* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2727 803 MobiDBLite consensus disorder prediction 630 650 - -
Mtr3g2727 803 MobiDBLite consensus disorder prediction 113 137 - -
Mtr3g2727 803 MobiDBLite consensus disorder prediction 754 803 - -
Mtr3g2727 803 MobiDBLite consensus disorder prediction 62 85 - -
Mtr3g2727 803 ProSiteProfiles Type-1 KH domain profile. 189 260 - -
Mtr3g2727 803 Gene3D K Homology domain, type 1 169 291 IPR036612 GO:0003723
Mtr3g2727 803 SMART kh_6 172 265 IPR004087 GO:0003676
Mtr3g2727 803 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 175 268 IPR036612 GO:0003723
Mtr3g2727 803 MobiDBLite consensus disorder prediction 447 467 - -
Mtr3g2727 803 MobiDBLite consensus disorder prediction 1 31 - -
Mtr3g2727 803 Pfam KH domain 189 260 IPR004088 GO:0003723
Mtr3g2727 803 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 23 795 - -
Mtr3g2727 803 MobiDBLite consensus disorder prediction 630 661 - -
Mtr3g2727 803 MobiDBLite consensus disorder prediction 754 773 - -
Mtr3g2727 803 PANTHER RNA-BINDING PROTEIN RELATED 23 795 IPR045071 -
Mtr3g2727 803 MobiDBLite consensus disorder prediction 398 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2727 Mtr-Chr3 41247964 41253265 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2727 K13095 - gmx:102668428 982.245