Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2724 ATGTTCTCACTCTCATTCTATGCGACCCTTGTGGGTTCTTCTTCTTCTTCTTGTTCATTCCCTTGTTCCTCTTCCAAAACCACCATTTTCAACAAAACCACACCCCCCACCACAAACACAACCATTTCTACTACATCCACATCAGCCACATCCAAACATGTCTGGACCAGAAGAATACCTCATCCTCCATTTTCCAACACCAACAAACAACAACAACAACAACAACGTCATACCCGAACCCAACAACAACAAAAACAACAATCCCCGTACATGGACCGTAGCGTCGACATGAATGAACTACTAACCTCAATCGCACAAACCCAAAACATCGAACAACTCTACTCCATATTGTCCCCTTACAATGGCAGACAACTTTCAATTCGTTTCATGATTTCAATTCTCTCCCGCGAACCCGATTGGCAACGCTCCCTCGCAATTCTCGATTGGATGAACGAAATAGCTCAATATTCACCTTCCCTTAACGTTTACAATGTTGTTATTCGCAATGTACTTCGTGCGAAACAATGGCAACTTGCACATGGACTGTTCGACGAAATGCTTCAAAAGGGTCTTTCACCTGATAAGTACACTTACTCAACGCTCATTACACATTTCAGTAAACAAGGTTTGTTTGATTCTTCTTTCTTTTGGCTGCAACAAATGGAACGTGATAATGTTTCCGGTGACCTTGTTTTGTATAGTAATTTGATTGAGCTTTCTCGGAAGTTGTGTGATTATTCCAAGGCAATTTCCATTTTTAATGCGTTGAAAGGTTCCGGTAATATTGTACCTGATCTTATTGCTTGTAATATGATGATTAGTGTGTATGGTAAGGCTAAGCTTTTTCGTGAGGCTCGGCTTCTTCTTCAGGAGATGAGAGATAATGGTGTTAACCCGAGTACCGCTAGTTACTCGACACTTCTTGCGATTTATGTTGATAATCAGAAGTTTGTTGAGGCGGTTTCTTTGTTTTCTGAAATGAACGAAGTTGAATGTCCGATTGATCTTACTACATGTAATATTATGATTGATGTTTATGGTCAGCTTCAGATGATCAAGGAAGCTGATTGCTTCTTTTGGGGCATGAGGAAAATGGGAATTGAACCTAATGTGGTTAGTTACAACACTGTCTTGAGGGTTTATGGAGAGGCTGGGTTATTTGGTGAAGCTGTTCACCTTTTCAGTTTGATGCAAATGAAAGGTGTACCGCAGAATGTTGTGACCTACAACACCATGATTAGTATTTATGGCAAATCTCTTGAGCATGATAAGGCAACGAATCTCATTCAAGAAATGCAGAGTAGAGGTATTCAACCAAATGCTATCACTTATTCAACCATAATATCTATATGGGAAAAGGCAGGGAAGTTGGACAGGGCAGCGATGCTTTTTCACAAGTTAAGGACTTCTGGAGTTAAAATTGATGAGATTCTTTATCAGACAATGATTGTGGCCTATCAGAAGGCTGGTTTAGTTGCTCATGCTAAAAGACTACTTAATGAGCTCAAGCAACCAGATAATGTTTCCAGGGAAACGGCAATCACAATACTTGCTAGAGCCGGTAAAGTTGACGAGGCTATGTGGGTTTTCCGGCAGGCTTTTGATGCTGGAGAAGTGAAAGATATATCTGTATTTGGGTGCATCATTGATATTTTCTCCAGGGAGAGAAAGTATGCTCATGTGGTTGAAGTGTTTGAGAAGATGAGAGAGGTTGGACATTTTCCTGATTCTAATGTTATTGCTCTTGTGCTGAATGCTTTTGGAAAGCTGCGCAAGTTTGAGAGAGCAGATGCTTTGTATAAACAGATGTATGAAGAGGGGTGTGTTTTCCCAGACGAAGTTCATTTTCAGATGCTCGGTCTATATGGTGCGAGAATGGATTTCAATATGGTGGAATCATTGTTTGAGAAGCTAGATTCCCATCCTAATATCAACAAGAAGGAGTTGCATTTTGTTGTTGCCAATATTTATGAAAGAGCAGATAGATTTAACGATGCTTCACGAATCATGAACAGGATGAATCACAAAGCAATAAGAAGTCATGGTAATGCTTAG 2055 0.4019 MFSLSFYATLVGSSSSSCSFPCSSSKTTIFNKTTPPTTNTTISTTSTSATSKHVWTRRIPHPPFSNTNKQQQQQQRHTRTQQQQKQQSPYMDRSVDMNELLTSIAQTQNIEQLYSILSPYNGRQLSIRFMISILSREPDWQRSLAILDWMNEIAQYSPSLNVYNVVIRNVLRAKQWQLAHGLFDEMLQKGLSPDKYTYSTLITHFSKQGLFDSSFFWLQQMERDNVSGDLVLYSNLIELSRKLCDYSKAISIFNALKGSGNIVPDLIACNMMISVYGKAKLFREARLLLQEMRDNGVNPSTASYSTLLAIYVDNQKFVEAVSLFSEMNEVECPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSYNTVLRVYGEAGLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDKATNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIVAYQKAGLVAHAKRLLNELKQPDNVSRETAITILARAGKVDEAMWVFRQAFDAGEVKDISVFGCIIDIFSRERKYAHVVEVFEKMREVGHFPDSNVIALVLNAFGKLRKFERADALYKQMYEEGCVFPDEVHFQMLGLYGARMDFNMVESLFEKLDSHPNINKKELHFVVANIYERADRFNDASRIMNRMNHKAIRSHGNA* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2724 684 Pfam Pentatricopeptide repeat domain 322 383 IPR002885 -
Mtr3g2724 684 Gene3D Tetratricopeptide repeat domain 358 506 IPR011990 GO:0005515
Mtr3g2724 684 Gene3D Tetratricopeptide repeat domain 507 684 IPR011990 GO:0005515
Mtr3g2724 684 PANTHER OS03G0856100 PROTEIN 31 677 - -
Mtr3g2724 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Mtr3g2724 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Mtr3g2724 684 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 31 677 - -
Mtr3g2724 684 Pfam PPR repeat 544 572 IPR002885 -
Mtr3g2724 684 Pfam PPR repeat 583 608 IPR002885 -
Mtr3g2724 684 Pfam PPR repeat 478 503 IPR002885 -
Mtr3g2724 684 Pfam PPR repeat 514 532 IPR002885 -
Mtr3g2724 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Mtr3g2724 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Mtr3g2724 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Mtr3g2724 684 Pfam PPR repeat family 405 448 IPR002885 -
Mtr3g2724 684 Pfam PPR repeat family 264 308 IPR002885 -
Mtr3g2724 684 Pfam PPR repeat family 158 206 IPR002885 -
Mtr3g2724 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Mtr3g2724 684 MobiDBLite consensus disorder prediction 61 91 - -
Mtr3g2724 684 TIGRFAM PPR: pentatricopeptide repeat domain 372 404 IPR002885 -
Mtr3g2724 684 TIGRFAM PPR: pentatricopeptide repeat domain 162 194 IPR002885 -
Mtr3g2724 684 TIGRFAM PPR: pentatricopeptide repeat domain 407 441 IPR002885 -
Mtr3g2724 684 TIGRFAM PPR: pentatricopeptide repeat domain 583 612 IPR002885 -
Mtr3g2724 684 TIGRFAM PPR: pentatricopeptide repeat domain 338 371 IPR002885 -
Mtr3g2724 684 TIGRFAM PPR: pentatricopeptide repeat domain 442 476 IPR002885 -
Mtr3g2724 684 TIGRFAM PPR: pentatricopeptide repeat domain 196 229 IPR002885 -
Mtr3g2724 684 TIGRFAM PPR: pentatricopeptide repeat domain 303 335 IPR002885 -
Mtr3g2724 684 TIGRFAM PPR: pentatricopeptide repeat domain 544 576 IPR002885 -
Mtr3g2724 684 TIGRFAM PPR: pentatricopeptide repeat domain 268 300 IPR002885 -
Mtr3g2724 684 MobiDBLite consensus disorder prediction 33 91 - -
Mtr3g2724 684 Gene3D Tetratricopeptide repeat domain 65 241 IPR011990 GO:0005515
Mtr3g2724 684 Gene3D Tetratricopeptide repeat domain 242 354 IPR011990 GO:0005515
Mtr3g2724 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Mtr3g2724 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Mtr3g2724 684 SUPERFAMILY HCP-like 170 366 - -
Mtr3g2724 684 MobiDBLite consensus disorder prediction 33 54 - -
Mtr3g2724 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Mtr3g2724 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2724 Mtr-Chr3 41219303 41221758 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2724 93 619 Glycosyltransferase AT1G05670 22.575 8.66e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2724 - - mtr:MTR_3g083680 1290.79