Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2721 ATGAGTATACCATTTTCTGTGGCAGCAAAGCCTTCCATCATTAGGACCAACAGAAAACCATATTGTAGAAGATATGATGTTATAACATCAGAATTAATCATGGTTCCAAAACATAAAACAGCCACCTTTCCTCAGTTGTCAAAACAAGGAGTTTCTGTTGCTGACCTACATGTACAAGAAGTTGTTGAAAAACAGTCTCAGACAAACATTTTTGACACTCTATGTTCTAGTAATTTCAAGCCACAGTTTGAGCCTAGTTTTCTCAAGGATGCCTATGAAATGTGCAGAAATATCTGTTCCGAGTATGCAAAGACATTCTATCTAGGAACTTTGCTTATGACCGAAGAAAGACAGAAGGCTATATGGGCTATATATGTTTGGTGCAGGAGGACAGATGAGCTTGTTGATGGTCCTAATGCTGACTATATGAGCTCTGCTGTTCTTGATAGATGGGAAGAAAGATTGCATGACATTTTCAATGGATGTCCCTATGATATGCTTGATGCTGCTCTTACAGATACAATCTCCAAGTTTCCCTTGGATATTAAGCCTTTTAGGGACATGATAGAAGGTATGAGAATGGATACGAGGAAATCACGATACAAAAATTTCGAAGAATTATATCTTTACTGCTACTATGTGGCGGGAACTGTTGGTTTGATGAGTGTTCCAGTAATGGGAATCGCGCCAGAATCCCTTATCCCTGCTCAAAGTGTATATAAATCAGCATTATATCTTGGTATTGGAAATCAACTCACAAACATTCTTAGAGATGTAGGGGAGGATGCATTAAGAGGTAGAGTGTACCTTCCACAAGATGAACTTGGTGAGTTTGGTTTATGTGACAATGATGTTTTCTCAAGAAAGGTGAGTGAAAGATGGAGAGAGTTTATGAAACAGCAGATTGCAAGGGCAAGATTCTACTTCAACTCGGCAGAAGAAGGAGCTTCTCACCTTGATAAAGCAAGCCGTTGGCCGGTTTGGTCCTCATTAATATTGTATCGCAAAATCTTAGATGCAATCGAAGACAACGATTATGACAATTTGACAAAACGAGCTTATGTAGGACGAACTGAGAAGTTTGTGTCGTTGCCTGCAGCTTATACTAGATCTCTCTCAATTCCCAAAACCGAATCTCATGCTTCCTTCACAAGGCATATGTAG 1164 0.3935 MSIPFSVAAKPSIIRTNRKPYCRRYDVITSELIMVPKHKTATFPQLSKQGVSVADLHVQEVVEKQSQTNIFDTLCSSNFKPQFEPSFLKDAYEMCRNICSEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNADYMSSAVLDRWEERLHDIFNGCPYDMLDAALTDTISKFPLDIKPFRDMIEGMRMDTRKSRYKNFEELYLYCYYVAGTVGLMSVPVMGIAPESLIPAQSVYKSALYLGIGNQLTNILRDVGEDALRGRVYLPQDELGEFGLCDNDVFSRKVSERWREFMKQQIARARFYFNSAEEGASHLDKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRTEKFVSLPAAYTRSLSIPKTESHASFTRHM* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2721 387 CDD Trans_IPPS_HH 93 360 IPR033904 GO:0004311
Mtr3g2721 387 Pfam Squalene/phytoene synthase 102 357 IPR002060 GO:0009058
Mtr3g2721 387 SFLD Squalene/Phytoene Synthase Like 89 370 IPR002060 GO:0009058
Mtr3g2721 387 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 2 377 - -
Mtr3g2721 387 SFLD Phytoene synthase like 89 370 IPR044843 GO:0004311
Mtr3g2721 387 SUPERFAMILY Terpenoid synthases 90 373 IPR008949 -
Mtr3g2721 387 ProSitePatterns Squalene and phytoene synthases signature 2. 246 271 IPR019845 GO:0016765
Mtr3g2721 387 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 2 377 - -
Mtr3g2721 387 Gene3D Farnesyl Diphosphate Synthase 85 367 IPR008949 -
Mtr3g2721 387 ProSitePatterns Squalene and phytoene synthases signature 1. 210 225 IPR019845 GO:0016765
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2721 Mtr-Chr3 41206143 41208981 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2721 K02291 - vvi:100262162 579.326