Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2719 ATGGCGAAGAAAATAAAAAAGAGGGGTCGAAGTTCAGTTAAGGAGAAGGCGGTTATTATCGATTCGTCGCCCAAAATTGTTACAGAATCATGTAACCCGCCAACTACTGAGTCTGTTGGTGAGGAGGTTTCAGTTGCAAAAGAGACAAATCCTTGTCCTCATCTTGTTAAAGGTATTCAATTAGATATATTGTCTGGTAAGGTTGAGTCTTCTGCACCCATAAGGTGTGAAGGCTGCAGGGAAGGTGCGGCTGATAGGAGGGGCGGTAAAGGAAAAGGTAAACATGGGAAGAAGAAAGGAGGTGCAGACTCAAAATCCGATTCAAAGTCTATATGGGTTTGTTTGGAGTGTGGTCAATACAACTGTGGAGGTGTGGGGCTACCTATAACCCCTAATTGTCATGCAATTGTGCATTCAAAGAAAGCTCGGCACCCGTTAGTGGTTAATATTGAAAAACCTCAACTGTGTTGGTGTTTTCGTTGCAATATGCTTATTCAAGTTGATAAGCTTGAAACCGATGAAGCAAGTCATGTTATATCTGATGTTGTGAAATTGTTAAAAGGACGATCGTCAGGAAAAACTTTAGTAGATGTTGAGGATGTTTCCATTGGGGATGGCAGTGTCACTTCAGAAATTAAGTTAGGATCTCTGTCCACAAGCGGTTCATATGGACAAGGTGGTTATGTGGTTCGAGGCATGGTTAATCTTGGGAATACTTGTTTTTTTAATTCAATCATGCAAAATCTGCTTGCTATGAATAAATTGCGGGACAATTTCCTAAGGGTTGATGCTTTTGTTGGGCCACTTATTAGTTCGTTGAAGAAGTTGTTCACTGAAACAAACCCAGAATCAGGATTCAAAAACATTATCAATCCAAGATCCTTTTTTGGTTGTGTATGTTCTAAGTCTCCTCAATTCCGAGGATATCAGCAACATGACAGTCATGAATTGCTTCGTTGTTTACTGGATGGTTTGAGTACTGAAGAACTGGCTGGTAGGAAGCAGAATGGTTCTCTCAAGAGAGATGGGACCTCTTCCAAAACATTAGTTGATGCTTTATTTGGGGGGCAGATATCTAGTACTGTATGTTGCAATGAATGTGGGCATTCCTCAACAGTGTATGAGCCTTTTTTAGATCTTTCCCTCCCTGTTCCAACCAAGAAACCTCCGCCTCGGAAGGCTCAACCAGCACCCAGAACCAGAAAGACTAAACCTCCACCAAAAAAAGGAGCAAAATCTCGAGTCAAAGTTAACAGGGATGTTGATCCGCTACCCGTTCAAAATATACCAAGCCAATCATCCTGCCTTGATCAGTCTGTCACATCAGGTGCTGGGGAATTGGTGATTTCTTCTGGTGTTTCTACGGTATTAGGTTCTGAAGAAATAAGCAGCGAGGCCAAAGTTAACAGGGATGATGATCCGTTACCTACTCAAAATGTACCAAGCCAATCATCCAGCCATGAATCGTCTTGCCCTGATCAGTCTGTCACATCAGTTGCTGGAGAATTGGTGGCTTCTTCTGGTGTTTCTACGGTATTGGGTTCTGAAGAAATAAGCAGTGAGGCCAATAAAGAGGACTTATCTCCATCAAATTTGGTTACCGTTGTAGAGTCTCAACAAATTCAAGGGTTTGACAGTGTTGCAACTAAAACGTCAGATTCATCAGATGCTTTTGCATGGTTGGATTTTGTGGAAGCTGAAACCAATGAAGAGGACTTATCTCCACCAAATTTGGTTACTGTTGGAGAATCTCAACAAATGCAAGGGCTTGACAGTGTTGCAAACAAAACCTCAGATTCATCAGATGATTTTCCATGGTTGGATTATGTGGAAGCCGAAACAACGATAGATGAATATGCTTCCATATCCCAGAAGGAAGATGCACTGGAGGTACAAGACTCTGAGAACAAGGATGAACGTTTGACTGCATTCCCTGAACAAGGTAGCTGTGAAACCAGTGGTCCTGTTTGTTTCCTTAAGGAGGATCAAAACCAAAGGCCTGATTTTTCTTCATCAAATGAGCGGGAAGATGAGGTTCCTTTACAAGTTCAAAATTCAGAAGTGCTGTTACTTCCATACAAAGAAGAAAGTTCCTCAGCCGGAGACATCACTGGAATAGATGGCGGGGACTCCTCGTCTGTTTTGGGTGGTGGTCCAGAAGAATCAGAGTTTGATGCCTTTGGTGGCTTATTTAATGAGCCTGAAGTTGTTGCTGGGCCTGCTCCCAGGCCTTCTTCGTCTGGTGATGTGGAAGCTGGCATTATCATAAGAAACATCAGTGAATCTGATCCAGATGAAGTAGATGATACAGATTCTCCAGTCTCTGTAGAGAGTTGTTTGGCACATTTTATAAAGCCCGAGCTTCTTTCAGATGAAAATGCTTGGCATTGTGAGAACTGTTCAAAAATCCTCCAACGTCAGAAGAAGAAAGCAAAAGAGCAGGAAAAAACCCTATCTGATGGAAATGCGAGTGGTAGTCATGATGAATCGTGGCATGCATCTAAAGCGTGTTCTTTTAAAGTCAGTAGTACAGGAAATGAAGATATTGAAAATGACAAGAATATAGAAAGTTCAGTTTCACATGTTCAACATGGCACAGAGCTTGAAAACGGTCAAAAAGATGAGCTGCGTAATTGTGAATTACAGTCTTCAAGTTTACATCAACCCAACAATGAAGAAAGCTGTGATAATTCAGCTGTTGATTCTTCTATTACCGGAAACGTCCAACAAGATGCTCCAATGTTAAATAATGATGACAATGACTCAGAAGAATGCAGTGGCAAAGAGACCGGCCTAGAAAGCATTAGAGTGAATAGGGATGCAACTAAGAGGGTCCTCATTTATAGAGCTCCACCTGTCTTGACCATTCATCTGAAGAGATTCAGCCAAGATGCACGTGGTCGCTTAAGTAAATTAAATGGTCATGTCAACTTCAGAGAAACAATGGATCTTAGACCATATATGGATCCCAGGTGTATTAATGAAGAGGAGTATAAATACCAGTTGGTTGGTGTTGTGGAGCACTCGGGAACCATGAGAGGGGGTCACTATGTTGCTTATGTGAGAGGGGGCCAGAGGAACAGAGAGAAGGTTGATAATAAAGAAAATGAGAGTTCCACATGGTATCACGCGAGTGATGCGTATGTGCGTCAAGTTTCCCTTGATGAAGTTCTTCGCTGTGAGGCATACATTTTGTTTTATGAAAGAAATTGA 3213 0.4189 MAKKIKKRGRSSVKEKAVIIDSSPKIVTESCNPPTTESVGEEVSVAKETNPCPHLVKGIQLDILSGKVESSAPIRCEGCREGAADRRGGKGKGKHGKKKGGADSKSDSKSIWVCLECGQYNCGGVGLPITPNCHAIVHSKKARHPLVVNIEKPQLCWCFRCNMLIQVDKLETDEASHVISDVVKLLKGRSSGKTLVDVEDVSIGDGSVTSEIKLGSLSTSGSYGQGGYVVRGMVNLGNTCFFNSIMQNLLAMNKLRDNFLRVDAFVGPLISSLKKLFTETNPESGFKNIINPRSFFGCVCSKSPQFRGYQQHDSHELLRCLLDGLSTEELAGRKQNGSLKRDGTSSKTLVDALFGGQISSTVCCNECGHSSTVYEPFLDLSLPVPTKKPPPRKAQPAPRTRKTKPPPKKGAKSRVKVNRDVDPLPVQNIPSQSSCLDQSVTSGAGELVISSGVSTVLGSEEISSEAKVNRDDDPLPTQNVPSQSSSHESSCPDQSVTSVAGELVASSGVSTVLGSEEISSEANKEDLSPSNLVTVVESQQIQGFDSVATKTSDSSDAFAWLDFVEAETNEEDLSPPNLVTVGESQQMQGLDSVANKTSDSSDDFPWLDYVEAETTIDEYASISQKEDALEVQDSENKDERLTAFPEQGSCETSGPVCFLKEDQNQRPDFSSSNEREDEVPLQVQNSEVLLLPYKEESSSAGDITGIDGGDSSSVLGGGPEESEFDAFGGLFNEPEVVAGPAPRPSSSGDVEAGIIIRNISESDPDEVDDTDSPVSVESCLAHFIKPELLSDENAWHCENCSKILQRQKKKAKEQEKTLSDGNASGSHDESWHASKACSFKVSSTGNEDIENDKNIESSVSHVQHGTELENGQKDELRNCELQSSSLHQPNNEESCDNSAVDSSITGNVQQDAPMLNNDDNDSEECSGKETGLESIRVNRDATKRVLIYRAPPVLTIHLKRFSQDARGRLSKLNGHVNFRETMDLRPYMDPRCINEEEYKYQLVGVVEHSGTMRGGHYVAYVRGGQRNREKVDNKENESSTWYHASDAYVRQVSLDEVLRCEAYILFYERN* 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2719 1070 Gene3D Cysteine proteinases 485 1070 - -
Mtr3g2719 1070 MobiDBLite consensus disorder prediction 811 831 - -
Mtr3g2719 1070 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 231 1070 IPR028889 -
Mtr3g2719 1070 SUPERFAMILY RING/U-box 51 166 - -
Mtr3g2719 1070 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 3 1069 - -
Mtr3g2719 1070 SMART Zf_UBP_1 102 155 IPR001607 GO:0008270
Mtr3g2719 1070 Gene3D Cysteine proteinases 220 443 - -
Mtr3g2719 1070 MobiDBLite consensus disorder prediction 462 498 - -
Mtr3g2719 1070 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 185 IPR013083 -
Mtr3g2719 1070 MobiDBLite consensus disorder prediction 475 498 - -
Mtr3g2719 1070 MobiDBLite consensus disorder prediction 81 106 - -
Mtr3g2719 1070 Pfam Ubiquitin carboxyl-terminal hydrolase 232 1067 IPR001394 GO:0004843|GO:0016579
Mtr3g2719 1070 Coils Coil 797 817 - -
Mtr3g2719 1070 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 1069 - -
Mtr3g2719 1070 SUPERFAMILY Cysteine proteinases 230 1069 IPR038765 -
Mtr3g2719 1070 Pfam Zn-finger in ubiquitin-hydrolases and other protein 76 168 IPR001607 GO:0008270
Mtr3g2719 1070 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 232 247 IPR018200 GO:0004843|GO:0006511
Mtr3g2719 1070 ProSiteProfiles Zinc finger UBP-type profile. 50 184 IPR001607 GO:0008270
Mtr3g2719 1070 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 1000 1017 IPR018200 GO:0004843|GO:0006511
Mtr3g2719 1070 MobiDBLite consensus disorder prediction 883 931 - -
Mtr3g2719 1070 MobiDBLite consensus disorder prediction 381 437 - -
Mtr3g2719 1070 CDD Peptidase_C19K 910 1068 - -
Mtr3g2719 1070 MobiDBLite consensus disorder prediction 394 412 - -
Mtr3g2719 1070 MobiDBLite consensus disorder prediction 883 920 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2719 Mtr-Chr3 41186583 41191329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2719 941 1069 Miscellaneous Gene Families AT2G24640 37.879 1.36e-15 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2719 K11844 - gmx:100780952 1257.66