Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2493 ATGTTGAACCAGTTGCTGGTTAAACCAGCTCAACGAAACTTAAACACTTCCCGATTCCGTCTTCCCCTCGCAACCCTCACCACCGTACCCGAATCTCCACCACCTCCCATCGACGCCACCGTTGCAAAACTCGTCCTCGAATCAGATCCAAAAACCCTCTCCCAAACCCTTTCAAATCCCACCTTCCAATGGACCCCACTTCTCGTCGACAACATTCTCAAACGCCTCTGGAACCACGGTCCCAAAGCCTTGCAATTCTTCAAACACCTAGACCGCCATCCAACCTACATCCACTCCATCTCCTCCTTCGAACACGCCGTCGACATCGCCGCCCGGTTACGTGAATACAACACTGCTTGGGCCTTAATGGGCCGTATGCGGGCCCTCCGTCTCGGCCCAACTCCCAAAACCTTTGCAATCCTTGCTGAACGCTATGCAACCGGTGGAAAAGCTCATAAGGCTGTGAAAGTGTTTTTGTCGATGCACGAACACGGTTGTCATCAGGATTTGAATTCTTTCAATACTATCCTTGATGTTCTATGCAAGACGAAGCGCGTTGAAATGGCGAATAACTTGTTTAAAACGCTTAGAGGTAGGTTTAAATGTGATAGTGTTAGTTATAATATAATGGCGAATGGTTGGTGTTTGATTAAGCGAACGCCAATGGCGTTGCAGGTTTTGAAGGAGATGGTGGAGAGGGGGGTTGATCCGACAATGGTTACTTATAATACATTGTTGAAAGGCTATTTTAGGTGTGGGCAATTGAATGAAGCTTGGGAGTTTTTTTTGGAGATGAAGAAGAGGAAGTGTGAGATTGATGTGGTTACTTATACCACTATGGTTCACGGATTTGGTGTTGCTGGTGAGGTTAAGAGATCGAAGAGGGTTTTCGATGCGATGGTGAAAGAGGGTTTGGTTCCTTCTGTTGCTACTTATAATGCTTTAATTCAGGTTTTGTGTAAGAAGGATAGTGTGCAGAATGCTTTGTTGGTTTTTGATGAGATGGTGGGGAAAGGGTGTGTGCCTAATTTGACTACTTATAATGTTGTTATAAGAGGCTTGTGTCATTCGGGTGAAATCGAGAGAGGTGTGGAGTTTATGAAGAGAATGGAGGAAAATGGGTGCATGCCAAGTGTTCAGACATACAATGTCGTGATACGTTATTATTGTGATGAAGGGGAACTTGAAAAGGGTTTGGAGTTGTTTGAAAAGATGGGGAATGGGACTTGCTTGCCCAATTTGGATACTTATAATATTCTGATTAGTGCCATGTTTGTGAGGAAGAAATCCGAGGATTTGGTGTTGGCTGGGAAGTTGTTGATAGAGATGGTTGGTAGAGGTTTCTTGCCGCGTAAGTTTACTTTTAATCGGGTGTTAAATGGACTTGTTCTAACAGGGAATCGAGAATTTGCAAATGAGATATTAAGAATGCAAAGCAGGTCTGGCCGTGTTCTTCGTCATGTGAAATTGTGA 1473 0.4453 MLNQLLVKPAQRNLNTSRFRLPLATLTTVPESPPPPIDATVAKLVLESDPKTLSQTLSNPTFQWTPLLVDNILKRLWNHGPKALQFFKHLDRHPTYIHSISSFEHAVDIAARLREYNTAWALMGRMRALRLGPTPKTFAILAERYATGGKAHKAVKVFLSMHEHGCHQDLNSFNTILDVLCKTKRVEMANNLFKTLRGRFKCDSVSYNIMANGWCLIKRTPMALQVLKEMVERGVDPTMVTYNTLLKGYFRCGQLNEAWEFFLEMKKRKCEIDVVTYTTMVHGFGVAGEVKRSKRVFDAMVKEGLVPSVATYNALIQVLCKKDSVQNALLVFDEMVGKGCVPNLTTYNVVIRGLCHSGEIERGVEFMKRMEENGCMPSVQTYNVVIRYYCDEGELEKGLELFEKMGNGTCLPNLDTYNILISAMFVRKKSEDLVLAGKLLIEMVGRGFLPRKFTFNRVLNGLVLTGNREFANEILRMQSRSGRVLRHVKL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2493 490 Pfam PPR repeat 143 166 IPR002885 -
Mtr3g2493 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Mtr3g2493 490 TIGRFAM PPR: pentatricopeptide repeat domain 346 378 IPR002885 -
Mtr3g2493 490 TIGRFAM PPR: pentatricopeptide repeat domain 275 309 IPR002885 -
Mtr3g2493 490 TIGRFAM PPR: pentatricopeptide repeat domain 205 238 IPR002885 -
Mtr3g2493 490 TIGRFAM PPR: pentatricopeptide repeat domain 311 343 IPR002885 -
Mtr3g2493 490 TIGRFAM PPR: pentatricopeptide repeat domain 381 413 IPR002885 -
Mtr3g2493 490 TIGRFAM PPR: pentatricopeptide repeat domain 240 274 IPR002885 -
Mtr3g2493 490 PANTHER OS02G0679200 PROTEIN 17 490 - -
Mtr3g2493 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Mtr3g2493 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Mtr3g2493 490 Gene3D Tetratricopeptide repeat domain 300 369 IPR011990 GO:0005515
Mtr3g2493 490 Gene3D Tetratricopeptide repeat domain 370 434 IPR011990 GO:0005515
Mtr3g2493 490 Pfam PPR repeat family 237 284 IPR002885 -
Mtr3g2493 490 Pfam PPR repeat family 307 356 IPR002885 -
Mtr3g2493 490 Pfam PPR repeat family 377 424 IPR002885 -
Mtr3g2493 490 Pfam PPR repeat family 169 215 IPR002885 -
Mtr3g2493 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Mtr3g2493 490 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 17 490 - -
Mtr3g2493 490 Gene3D Tetratricopeptide repeat domain 66 199 IPR011990 GO:0005515
Mtr3g2493 490 Gene3D Tetratricopeptide repeat domain 200 299 IPR011990 GO:0005515
Mtr3g2493 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Mtr3g2493 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2493 240 471 Miscellaneous Gene Families AT4G11690 33.621 9.87e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2493 - - adu:107473026 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2493 3 38890161 38892560 Mtr3g2493 3 38890161 38892560 ECH