Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2478 ATGGGTTCTATAGTCCATCCTTCAGGTGTAACTAGTAATGATGAAACTGGTTTCTCTACTCCAAAAATCACTGCTGCAGAAGGCAATGTTGGAGAATCAAGAAGTGATGAACATCCACAAATTCCTGGATGGTTTGCAGAACACTGTCCAATATGGCCAGGGGAAGCACACTTCTTGAAGGTAGAAAATATTTGTTTCCAAGGGAAATCTGAATTTCAAGATATGCTAGTTTTTGAGACATCAACATATGGTAAGGTATTTGTTCTGGATGGAGCACTCCAACTCACTGAGAAAGATGAATGTTCTTACCAAGAAATGATGACTCACCTTCCTCTTTGCTCAATTCCAAACCCAAAAAAGGTGCTGCTTTTTGGTGGAGGAGATGGTGGCATCCTTAGGGAAATTTCCCGCCACTCTTCTGTTGAACAAATTGACATATGTGAAATTGACACTATGCTGATTGATGTTTATAAAAAATATTTCCCAGATATAGCTATTGGATACAAGGACCCCAGAGTCAAGCTTCATGTAATAGATGGAACAATTTTTCTGAATTCTGTCCCAAAAGGCACATATGATGCAATAATAGTGGATGCCTTCGATCCAGTAAGGCCTGATCATGAGCTTTTTGAAACTCAATTCTTTGAATTGATTTCAAAAGCTCTTCGTCCTGGAGGAGTTTTGTGCATCCAAGCTGAGAGCTTTTGGTTTAAGTCATTGGATATTGAAGAACTATTAATCAAAAGCCGCAAAATTTTCAAAGGCTCCAGTGACTATGCTTGGACTAATGTCCCAACATATCCAAGTGGAGTGATTGGTTTCTTGCTTTGCTCAACTGAAGGTCCATATGTGGACTTCAGAAATCCAATTAATCCTATTGGTCCTGAAAATTATGGCATATCAAAGCATCCTTTGAAGTATTACAACTCAGAGGTTCATTCAGCTTCATTTTGCTTGCCATCTTTTGCTAAAAGGACAGAAGCTAATAAGAGCACTGCAAAAAAGATTTGA 1011 0.3867 MGSIVHPSGVTSNDETGFSTPKITAAEGNVGESRSDEHPQIPGWFAEHCPIWPGEAHFLKVENICFQGKSEFQDMLVFETSTYGKVFVLDGALQLTEKDECSYQEMMTHLPLCSIPNPKKVLLFGGGDGGILREISRHSSVEQIDICEIDTMLIDVYKKYFPDIAIGYKDPRVKLHVIDGTIFLNSVPKGTYDAIIVDAFDPVRPDHELFETQFFELISKALRPGGVLCIQAESFWFKSLDIEELLIKSRKIFKGSSDYAWTNVPTYPSGVIGFLLCSTEGPYVDFRNPINPIGPENYGISKHPLKYYNSEVHSASFCLPSFAKRTEANKSTAKKI* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2478 336 Hamap Polyamine aminopropyltransferase [speE]. 43 328 IPR001045 GO:0003824
Mtr3g2478 336 Pfam Spermidine synthase tetramerisation domain 43 97 IPR035246 -
Mtr3g2478 336 PANTHER SPERMIDINE SYNTHASE 40 329 - -
Mtr3g2478 336 PANTHER SPERMIDINE/SPERMINE SYNTHASE 40 329 IPR001045 GO:0003824
Mtr3g2478 336 Gene3D Vaccinia Virus protein VP39 97 331 IPR029063 -
Mtr3g2478 336 Gene3D Spermidine synthase, tetramerisation domain 25 96 IPR037163 -
Mtr3g2478 336 MobiDBLite consensus disorder prediction 1 22 - -
Mtr3g2478 336 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 325 IPR029063 -
Mtr3g2478 336 TIGRFAM speE: spermidine synthase 44 322 IPR001045 GO:0003824
Mtr3g2478 336 Pfam Spermine/spermidine synthase domain 100 286 - -
Mtr3g2478 336 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 42 279 IPR030374 -
Mtr3g2478 336 CDD AdoMet_MTases 120 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2478 Mtr-Chr3 38706071 38710527 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2478 K00797 - gmx:100785862 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2478 3 38706071 38710527 Mtr3g2478 3 38706071 38710527 ECH