Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2432 ATGCTGACTCAGTTTCACTGGCTCCATTCTGAACTCACCAACGTTTGTAAGTCCCTATTACGTGTGAAGCAGTTACATGCTTGTCTTTTGAAAACCCATCTCTCAAAAGACCCTTTTTATGCTACTCAAATCATTAGACTTTATGCATTTAACAATCACATTAACTATGCACACCACGTGTTCGACAAAACTTCCACCCGAAGTGTTTTCCTTTGGAATTCCATGATTCGAGCTTTTGCCAAGGCTCGAAGATTCAGCAACGCAATTTCTTTATTTAGAACCATGCTTGTGGATGATATAAGGCCTGATAATTATACATATGCTTGTGCTATACGTGCGTGCGCTGATAGCTTTGATTTTGGTATGCTAAGAGTTGTTCATGGAAGTGCTGTGTCTGTTGGGTTGGGACTTGACCCTATTTGTTGCAGTGCACTTGTGAGTGCTTATTCAAAACTTGGCGTGGTTCATGAAGCGCGTAGAGTGTTTGACGGGATTGTTGAACCGGATTTAGTTTTGTGGAACTCGTTGATTTCTGCTTATGGGGGTTCTGGAATGTGGGAGATAGGGATTCAGATGTTTAGCTCAATGAGACTTGCTGGGAAGAAGCCTGATGGGTTTACATTGGCTGGGTTGCTTGGAGGTATTGCAGATTCTAGCTTGCTGAGCATTGGACAAGAATTACATGGTTTGAGTCAAAAGAGTGGTCTTGATTCTGATTGTCATGTAGGTAGTTTACTTGTGAGTATGTACTCGAGATGTAAGTGCATAGATTCAGCATATAGAGTCTTTTGCGGTATATTCAATCCTGATTTGGTTACATGGTCTGCTCTAATATCTGGATATTCTCAGTGTGGGGAGTATCAGAAAGCATTGCTCTTTTTCAGGAAATTAAACATGAAGAGCAAGAAACTGGATTCTGTTTTGATTGCCACTGTGTTGGCTTCTATAACTCAGATGGCGAATGTACTACCAGGATGTGAGATACATGGTTATGTTCTTCGGCATGGATTGGAATCAGATGTCAAGGTCTCCTCCGCTCTCATAGACATGTATTCAAAGTGTGGTTTCCTGCACTTGGGGACTTGTGTGTTCAGGATAATGTTAGAACGGAATATAATTTCTTATAATTCAATGATTTTAGCTTATGGCTTGCATGGATGTGCTTCTCAGGCTTTCACGATGTTTGATGAGATGCTGCAGAAAGGATTGGTACCTGATGAAGGAACATTCTCTGCTCTCCTTTCTGCTTGTTGTCATGCTGGCCTGGTCAAAGATGGCCGGGAGTTATTCTGGAGAATGAAAGATGAATTCAACATCAAAGCTAGACCTGAGCACTATGTTTACATGGTGAAGCTTCTTGGCGGTGTTGGAGAGTTAGAAGAGGCCTACAATCTCACTCAGTCCTTACCCAAACCAGTAGACAAGGCCATCCTGGGAGCTTTATTATCATGCTGTGATTCTTATGGGAATTCTGAGTTGGCAGAAACCGTAGCTCAGCAGATTTTCAAAAGTAATCCCGCTGACAATGTTTACAGGGTTATGCTTTCGAATATATATGCTGGCGATGGGAGGTGGGATGATGTGAAGAAGTTGAGGGACAAAATGGTCGGAGGTCAGAAGAAAATGCGTGGAGTTAGCTGGATCGAAGGCAGTTATTATTAA 1662 0.4206 MLTQFHWLHSELTNVCKSLLRVKQLHACLLKTHLSKDPFYATQIIRLYAFNNHINYAHHVFDKTSTRSVFLWNSMIRAFAKARRFSNAISLFRTMLVDDIRPDNYTYACAIRACADSFDFGMLRVVHGSAVSVGLGLDPICCSALVSAYSKLGVVHEARRVFDGIVEPDLVLWNSLISAYGGSGMWEIGIQMFSSMRLAGKKPDGFTLAGLLGGIADSSLLSIGQELHGLSQKSGLDSDCHVGSLLVSMYSRCKCIDSAYRVFCGIFNPDLVTWSALISGYSQCGEYQKALLFFRKLNMKSKKLDSVLIATVLASITQMANVLPGCEIHGYVLRHGLESDVKVSSALIDMYSKCGFLHLGTCVFRIMLERNIISYNSMILAYGLHGCASQAFTMFDEMLQKGLVPDEGTFSALLSACCHAGLVKDGRELFWRMKDEFNIKARPEHYVYMVKLLGGVGELEEAYNLTQSLPKPVDKAILGALLSCCDSYGNSELAETVAQQIFKSNPADNVYRVMLSNIYAGDGRWDDVKKLRDKMVGGQKKMRGVSWIEGSYY* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2432 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Mtr3g2432 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Mtr3g2432 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Mtr3g2432 553 Gene3D Tetratricopeptide repeat domain 374 552 IPR011990 GO:0005515
Mtr3g2432 553 Gene3D Tetratricopeptide repeat domain 6 124 IPR011990 GO:0005515
Mtr3g2432 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Mtr3g2432 553 Pfam PPR repeat family 68 115 IPR002885 -
Mtr3g2432 553 Pfam PPR repeat family 371 419 IPR002885 -
Mtr3g2432 553 Gene3D Tetratricopeptide repeat domain 125 225 IPR011990 GO:0005515
Mtr3g2432 553 Gene3D Tetratricopeptide repeat domain 226 327 IPR011990 GO:0005515
Mtr3g2432 553 Pfam PPR repeat 272 297 IPR002885 -
Mtr3g2432 553 Pfam PPR repeat 171 199 IPR002885 -
Mtr3g2432 553 Pfam PPR repeat 141 164 IPR002885 -
Mtr3g2432 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 436 IPR002885 -
Mtr3g2432 553 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Mtr3g2432 553 TIGRFAM PPR: pentatricopeptide repeat domain 71 103 IPR002885 -
Mtr3g2432 553 TIGRFAM PPR: pentatricopeptide repeat domain 409 436 IPR002885 -
Mtr3g2432 553 TIGRFAM PPR: pentatricopeptide repeat domain 272 297 IPR002885 -
Mtr3g2432 553 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Mtr3g2432 553 PANTHER OS01G0545900 PROTEIN 5 548 - -
Mtr3g2432 553 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 548 - -
Mtr3g2432 553 Pfam E motif 488 549 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2432 Mtr-Chr3 38141853 38147212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2432 29 549 Glycoside Hydrolase AT3G49170 30.246 2.63e-77 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2432 - - gmx:100820049 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2432 3 38141853 38147212 Mtr3g2432 3 38141853 38147212 ECH