Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2423 ATGTTGAACAAGTTATATGTCTGTGTATTAGAAGCCAAAGACTTACCCGTGAAAAATTCTCGTGTGAAGCTTAAACTTGGAAAGTTTAAATACAAGACAAGGATATTGAAAAACACGTTCAATCCCATTTGGAACGAGGAGTTTGTTTTTAAGGTGAAGGATATTGCTGAGGATGTGCTTGTTGTCAATGTTGTTAATCATAGTGATCAATCAAAGGTAGTGGATTTTGTTGGTGAGGTACGGATTCCGGTTGGTTCGGTTGGTTTTGAGGATAATAAGCAAATATTGCCACCCACTTGGTTCGAGCTTCAATGTTCTAACAAGAACGGCAAATTTTTCAACAAATTTTGTGGGAAGATTCTCCTTACAATTTCTCTTCATTATAAGGACCATGTTTCTTTTATGAATCATAAGCATTCTCCAAACTCAACTGCTTCAATTAAGGACTCAACAGAATCTGAACGTCTTCACATTTCATCTCATCAATCTTTTCATAAAAATCGTAAAATGGGTGAAGGCAAACATTTGTTGAAGGCTATCGCTGATCGCTTAGAAAGGATTTTACATAAGAAAGAACGAAACTCAAAACCCGTGGATTGTTCAGAAACATCAAATTCATTGTCTGATTACGAAGATAGTGTTCAAGAAAATTCACCCCCTTGTAGTTTTGAAGAAGGCATTGCACTAATGCAGTCAAGAGATAACCAACCAGAAAGTCCTGAAAATTTGCAGGGTGGTATTTTAGTAGATAAGATTTATGAAGTATCTCCATACAATCTTAATGTAGTTCTTTTCGTGCCGGATTCACAGTTTAGGAAAGATTTAGCAGAACAACAAGGGACAACAAATTTGCAAGAAGGGGCTTGGTCCTGGAAAGATGAAGATATGTCTTGTTTGACTCGAGTCGTCAACTATACAAAAGCTGCTTCAAAATTGGTTAAAGCTCTCAATACCACTGAGGAACAAACCTATATTAGAGCGACTAAAGATGAATTTGATGTACTTGTTAGTGTATGCACCCCTGAGGTTCCTTATGGGAATTCATTTCGGGTCGAAATTCTTTACAAGATAATGCCTGGCGAAGATGTGTCTTGTGTAAAGGAATCCTCACATCTTGTGATAACGTGGGGAATGGTTTTCCTACAAAGCACAATGATGAAAGGTGTGATAGAGAATGGGGCTAAACAAGGTTTGAAGGAGAGTTTTGATCAGTTTGCTAACCTACTTGCTCAGAGGTTCAAGGTGCTAGATAAGGAGGATTTGATAAACAAAGAACATTTGTTGGCAACTTTGCAGACAGAGAGCCAGTGGAATTGGTGGCAGGCAATTACATACTTCTGGAATTTCACAGTAGTTTCCACATTTTTTATGTGTTTATATGTGTTGCTGCATATTTTAAGGTGTGGTCCAAGTCAACCTCGGGGATTGGAATTTAGAGGGATCGAACTGCCAGATAGCTTAGGAGAACTAGTAACAAGTGGAATTTTAGTTATCCAGTTGGAGCGTGTTTATCATATGGTATCTCATTTTGTGCAAGCTAGATTTCAAATGGGAACTGACCATGGCATGAAAGCACATGGTGATGGATGGGTTGTTACTGTAGCTTTAATTGAGGGTGTTGACCTAGTCTCATTGGAGTCAACAGGGTTGTCAGATCCTTATGTGGTTTTCACCTGTAATGGACAAACAAGGTCAAGCTCTGTCAAGCTTGAGACATCAGATCCTCAATGGAATGAGATATTAGAGTTTGATGCTATGGAAGAACCACCATCAGTTTTGTATGTGGAAGTTTTTGATTTTGACGGTCCATTTGACCAGGATGTTTCACTTGGACATGCTGAGATCAATTTCCTAAAGCATACATCCACAGAATTGGCAGACATGTGGGTCGTGCTTGAAGGAAAACTCGCCCAATCTGCTCAATCGAAATTGCATTTGAGAATTTTCTTGGACAATAACAAAGGAGTTGCAATTATCAAGGATTACTTGGAGAAGAAGGAAAAGGAAGTAGGAAAAAAGTTCAATCTTCCATCACCTCAAAGGAATTCTACATTCCAGAAATTGTTTGGGTTGCCACCAGAAGAATTTCTAATCAATGATTTCACATGTTCCCTGAAGAGAAAATTGCATTTACAGGGTCGGCTATTTCTTTCTGCAAGGGTTCTGGGATTTTATGCAAATTTGTTTGGACATAAAACAAAATTTTTCTTCCTTTGGGAAGATATTGATAACATTCAAGTGCTTCCTCCATCATTAGCATCATTAGGAAGCCCTACATTGGCCGTAATTCTTCGAAGAGGACGAGGTATCGATGCAAGGCACGGTGCCAAGACGCAAGATGAAGAAGGAAGGCTTAGGTTTCATTTTCAGTCATTTGTTTCATTCGGTTCTGCCTCCAGAACGATAATGGCATTGTGGAGAGCAAGAATACTGAACCCCTATCAGAAAGAACAAATTACAGAAGAGCATGAAGATCAGGAGGTCTTGGTAATGCCTGAAGACTCTGGATCTATCCTAGAAGATGAGGCAAAAATGTCCAGGATTTACTCTGCTGAACTACCAATTAAGATAAGATCAATGATGGGAATTTTTGATGGAGGAAACATAGAGCATAAGATTATGAAAAGAACCGGTTGTATGGACTATGACACTACACCTTGGGAACCAGTAAAACCTGATGTACTCGAAAGGCATGTTACGTACCAATTTAACCGGCATGTGTCAGTTTTTGATGTTACAAGCACACAACAAAAATATCCAAATACAAACACTGAAGGATGGATTGTGAATGAAGTTATGATCCTCAATGGTGTTCCATTTTCCGATCACTTTCGTATTCATTTTAGGTACGAAATTGAGAAATCGGCTCTTGGTGAATGTGCTTGCAAGTGTGATGTATACATTGGCATTATGTGGCTTAGGAGCTCTAAGTTTCAGAAAAGGATCAATAGGAACATAACATCCAAGTTTAAAATTCGACTGGAAGAAATATTTGAACTACTGCAGAAAGAGATTTTATTGATGTCTCATAAATCGAATGTGTAA 3045 0.3846 MLNKLYVCVLEAKDLPVKNSRVKLKLGKFKYKTRILKNTFNPIWNEEFVFKVKDIAEDVLVVNVVNHSDQSKVVDFVGEVRIPVGSVGFEDNKQILPPTWFELQCSNKNGKFFNKFCGKILLTISLHYKDHVSFMNHKHSPNSTASIKDSTESERLHISSHQSFHKNRKMGEGKHLLKAIADRLERILHKKERNSKPVDCSETSNSLSDYEDSVQENSPPCSFEEGIALMQSRDNQPESPENLQGGILVDKIYEVSPYNLNVVLFVPDSQFRKDLAEQQGTTNLQEGAWSWKDEDMSCLTRVVNYTKAASKLVKALNTTEEQTYIRATKDEFDVLVSVCTPEVPYGNSFRVEILYKIMPGEDVSCVKESSHLVITWGMVFLQSTMMKGVIENGAKQGLKESFDQFANLLAQRFKVLDKEDLINKEHLLATLQTESQWNWWQAITYFWNFTVVSTFFMCLYVLLHILRCGPSQPRGLEFRGIELPDSLGELVTSGILVIQLERVYHMVSHFVQARFQMGTDHGMKAHGDGWVVTVALIEGVDLVSLESTGLSDPYVVFTCNGQTRSSSVKLETSDPQWNEILEFDAMEEPPSVLYVEVFDFDGPFDQDVSLGHAEINFLKHTSTELADMWVVLEGKLAQSAQSKLHLRIFLDNNKGVAIIKDYLEKKEKEVGKKFNLPSPQRNSTFQKLFGLPPEEFLINDFTCSLKRKLHLQGRLFLSARVLGFYANLFGHKTKFFFLWEDIDNIQVLPPSLASLGSPTLAVILRRGRGIDARHGAKTQDEEGRLRFHFQSFVSFGSASRTIMALWRARILNPYQKEQITEEHEDQEVLVMPEDSGSILEDEAKMSRIYSAELPIKIRSMMGIFDGGNIEHKIMKRTGCMDYDTTPWEPVKPDVLERHVTYQFNRHVSVFDVTSTQQKYPNTNTEGWIVNEVMILNGVPFSDHFRIHFRYEIEKSALGECACKCDVYIGIMWLRSSKFQKRINRNITSKFKIRLEEIFELLQKEILLMSHKSNV* 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2423 1014 ProSiteProfiles VASt domain profile. 244 417 IPR031968 -
Mtr3g2423 1014 ProSiteProfiles VASt domain profile. 844 1005 IPR031968 -
Mtr3g2423 1014 SMART C2_3c 4 96 IPR000008 -
Mtr3g2423 1014 SMART C2_3c 531 630 IPR000008 -
Mtr3g2423 1014 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 4 1011 - -
Mtr3g2423 1014 MobiDBLite consensus disorder prediction 193 221 - -
Mtr3g2423 1014 Gene3D - 681 808 IPR011993 -
Mtr3g2423 1014 Gene3D C2 domain 515 650 IPR035892 -
Mtr3g2423 1014 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 138 IPR035892 -
Mtr3g2423 1014 CDD C2 532 632 - -
Mtr3g2423 1014 PANTHER BNAA05G37250D PROTEIN 4 1011 IPR044511 -
Mtr3g2423 1014 SMART gram2001c 683 749 IPR004182 -
Mtr3g2423 1014 Gene3D C2 domain 2 129 IPR035892 -
Mtr3g2423 1014 MobiDBLite consensus disorder prediction 199 220 - -
Mtr3g2423 1014 ProSiteProfiles C2 domain profile. 511 630 IPR000008 -
Mtr3g2423 1014 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 530 658 IPR035892 -
Mtr3g2423 1014 ProSiteProfiles C2 domain profile. 1 101 IPR000008 -
Mtr3g2423 1014 CDD C2 5 103 - -
Mtr3g2423 1014 Pfam C2 domain 532 630 IPR000008 -
Mtr3g2423 1014 Pfam C2 domain 4 92 IPR000008 -
Mtr3g2423 1014 Pfam GRAM domain 684 751 IPR004182 -
Mtr3g2423 1014 Pfam VAD1 Analog of StAR-related lipid transfer domain 848 987 IPR031968 -
Mtr3g2423 1014 Pfam VAD1 Analog of StAR-related lipid transfer domain 248 397 IPR031968 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2423 Mtr-Chr3 38058761 38064424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2423 2 140 Lipid Metabolism Gene Families AT1G22610 32.192 8.96e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2423 - - gmx:100811103 1557.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2423 3 38058761 38064424 Mtr3g2423 3 38058761 38064424 ECH