Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2405 ATGGGTGGATCACATTCAAAACGTAGGGGCTCTAGGCAACGTTCTTCATCCTCAAGGTCAAATCCTTTGTTTCCTCAATATCAATCACCTTATTTGCCACAACAAACTCAAGATCATGGCTATAATTATGGGGTTCCACCTCCAGCTCAAAGCTATGGTGGTGTTGGTCATGCTTCTCAACAAAGCAAGAAGTCAGACAAGAAGTTTACAAAAATAGGTGATGATTATAATAGCTTGGATCAGGTAACTGAGGCTCTAGCGAGTGCTGGCCTAGAGTCTTCTAATCTCATTGTTGGTATTGATTTTACAAAGAGCAATGAATGGACAGGTGCAAGGTCGTTTCAAAGGAGATGCCTGCATGACATTGGGCATGAACCAAATCCATACGAACAAGCTATATCTATCATCGGGAAAACACTGTCGTCCTTTGATGAGGATAACTTGATTCCCTGTTTTGGATTTGGAGATGCATCAACACATGACCAGGAAGTTTTTAGTTTTAATGCTGAGGATAGATTTTGTCATGGATTTGAAGAAGTGCTGTCACGGTATAGGGAATTGGTCCCTCAATTAAGGCTTGCAGGACCTACATCATTTGCCCCAATCATTGAGATGGCAATCACCATTGTTGAGCAAAGTGAAGGCCAATACCATGTTTTATTGATCATAGCAGATGGGCAGGTGACAAGAAGTGTTGACGTTGATCATGGGCAATTGAGTGCACAAGAAAAGAAAACTGTAGAAGCTATTGTGAAAGCTAGTGAATATCCCCTATCAATCGTATTAGTCGGAGTTGGAGATGGGCCATGGGACATGATGAAACAGTTTGACGATAACATTCCTGCACGAGCATTTGATAATTTTCAGTTTGTGAATTTCACGGAAATAATGTCGAAGAACATGGATCGGTCTAGAAAGGAAGCTGAGTTTGCACTTTCCGCCTTAATGGAAATACCTGACCAGTACAAGGCAACACTAGAACTTAGTATATTGGGCAATCGTAGTAGAAGGAATGATATACACAGGATTCCTCTACCGCCACCTCAATATGGCGCACCATCTTTCAACCCCCCAAAAGCTTCCAGTCAAAACAGTTTTCGCCCCAGTGCACCATCTCAGAAACACGGTGTTACCACGAACCCCCACACAAGTTCTGCGTCTGATAATCAGTTTTGTCCCATTTGCCTCACTAATCCGAAGGACATGGCCTTTGGGTGCGGACATCAGACATGCTGCGAGTGTGGACAGGATCTTCAGTTATGCCCCATTTGCAGGAGTAGCATTAATACTAGAATAAAACTTTATTAG 1308 0.4266 MGGSHSKRRGSRQRSSSSRSNPLFPQYQSPYLPQQTQDHGYNYGVPPPAQSYGGVGHASQQSKKSDKKFTKIGDDYNSLDQVTEALASAGLESSNLIVGIDFTKSNEWTGARSFQRRCLHDIGHEPNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFNAEDRFCHGFEEVLSRYRELVPQLRLAGPTSFAPIIEMAITIVEQSEGQYHVLLIIADGQVTRSVDVDHGQLSAQEKKTVEAIVKASEYPLSIVLVGVGDGPWDMMKQFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKEAEFALSALMEIPDQYKATLELSILGNRSRRNDIHRIPLPPPQYGAPSFNPPKASSQNSFRPSAPSQKHGVTTNPHTSSASDNQFCPICLTNPKDMAFGCGHQTCCECGQDLQLCPICRSSINTRIKLY* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2405 435 MobiDBLite consensus disorder prediction 1 67 - -
Mtr3g2405 435 CDD RING-HC_RGLG_plant 392 435 IPR045317 GO:0061630|GO:0070534
Mtr3g2405 435 SMART VWA_4 93 296 IPR002035 -
Mtr3g2405 435 MobiDBLite consensus disorder prediction 15 41 - -
Mtr3g2405 435 Pfam Copine 118 331 IPR010734 -
Mtr3g2405 435 PANTHER RING-FINGER PROTEIN 1 435 - -
Mtr3g2405 435 MobiDBLite consensus disorder prediction 338 386 - -
Mtr3g2405 435 Pfam Zinc finger, C3HC4 type (RING finger) 389 429 - -
Mtr3g2405 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 435 IPR013083 -
Mtr3g2405 435 SUPERFAMILY vWA-like 94 277 IPR036465 -
Mtr3g2405 435 SUPERFAMILY RING/U-box 386 431 - -
Mtr3g2405 435 ProSiteProfiles Zinc finger RING-type profile. 392 425 IPR001841 -
Mtr3g2405 435 PANTHER COPINE FAMILY PROTEIN 1 1 435 - -
Mtr3g2405 435 MobiDBLite consensus disorder prediction 355 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2405 Mtr-Chr3 37881405 37885587 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2405 K16280 - gmx:100809850 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2405 3 37881405 37885587 Mtr3g2405 3 37881405 37885587 ECH