Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2395 ATGGCGAAGGAAGAAATTGCAAATCAAGCTATCAAGCATGCTTTCAGGGCTCTGAGAAAGCGGCATTTGAACGAAGAAGGAGCTCATGCTGCTGCTTTTGCTGCTCTTTCTAGACCTATTGTTTCTCAGGCCTCTGAATGGAAAGAGAAAGCAGAGAGTCTGGAAATGGAACTTCAGCAATGCTACAAAGCTCAATCCCGAGTATCTGAGCAGCTTGTTGTGGAAATAGCTGAATCTAGAACTTTGAAATCTGTGATTCAAGAGAAAGAAACTGCAGTTGATGATTTGCAAAAAGAGTTGACTTCAATGAGGGATGAGTGCAAGCAAATGAAAAAGGACTTAGAAGACAAAATTAATGCTCATGAAATCATTCTAAGTGAGAATACAGAGCTTAAAACACAATTGGAGGAAATGACTATTAGAGCCAAGAGTGCTGAAATTGAACATAAGACATTGGTGGATCGCATGATGTTAGAAAAAATGAAGAATGCTGAACAACTAAATGAGGCAAACCAACTGTATGATGACATGATCAAGCAGCTAAAGGCCAGTGGTTTAGAAAAACTTGCAAGACAGCAGATAGATGGCATAGTTCGCCAAGGTGAAGAATACGCCGATGTCATTTTGCAGTCAATTGTCCCATCCACATGTAAACACAGGCTCCAAGCACACGAAGGTGGTTGTGCTGCCATATTGTTTGAGTGTAATTCTAATAAATTGATAACCGGGGGACAGGATCGAGCAGTTAAAGTGTGGGATACCGATTCAGGATCCTTAATTTCCAATCTTCATGGCTGCCTTGGCTCTGTATTAGATCTCGCAATCACCAACGATAATAGATCTGTTATTGCTGCTAGCAGCTCAAACAACTTGTATGCATGGGATCTCAACTTGGGTCGTGTCCATCATACCCTTACTGGCCACACGGATAAAGTCTGTGCCGTTGACGTCAGCAAGGTTTCCAGCCGTCACGTCGTCAGTTCAGCTTACGACGGCACTATAAAAGTTTGGGACTTGCTTAAAGGCTATTGCATTAACACAATCATTTTCCACAGCAACTGCAATGCTCTTTCCTTCAGCACGGATGGACAGACCATACTTTCTGGACATGTTGACGGAAATCTTCGACTATGGGATATTAAAAGCGGAAAACTACTCAGCGAGGTTGCAGCACACTCACTTGCTGTCACATCAATATCTCTTTCTCGAAATGGAAATGTTGTACTAACCAGTGGAAGGGACAATTTGCACAATTTGTTTGACATGCGATCTCTAGAAGTTAGTGGCACACTGAAAGCCGCCGGAAATAGAGTGGCCTCCAATTGGAGTCGCTCGTGTATTAGCCCGGATGATAAAAATGTTGCTGCCGGATCATCAGATGGATCTGTCTATGTTTGGTCAGCATCTAAAGCTGATATAGTCGGTACTCTGAAGGAACATACTTCTTCTATCCTTTGTTGTACATGGAGTGGCCTCGGAAGACCCTTAGCTTCAGCTGACAAGAATGGAGTTGTTTGTATCTGGACCTAA 1530 0.4281 MAKEEIANQAIKHAFRALRKRHLNEEGAHAAAFAALSRPIVSQASEWKEKAESLEMELQQCYKAQSRVSEQLVVEIAESRTLKSVIQEKETAVDDLQKELTSMRDECKQMKKDLEDKINAHEIILSENTELKTQLEEMTIRAKSAEIEHKTLVDRMMLEKMKNAEQLNEANQLYDDMIKQLKASGLEKLARQQIDGIVRQGEEYADVILQSIVPSTCKHRLQAHEGGCAAILFECNSNKLITGGQDRAVKVWDTDSGSLISNLHGCLGSVLDLAITNDNRSVIAASSSNNLYAWDLNLGRVHHTLTGHTDKVCAVDVSKVSSRHVVSSAYDGTIKVWDLLKGYCINTIIFHSNCNALSFSTDGQTILSGHVDGNLRLWDIKSGKLLSEVAAHSLAVTSISLSRNGNVVLTSGRDNLHNLFDMRSLEVSGTLKAAGNRVASNWSRSCISPDDKNVAAGSSDGSVYVWSASKADIVGTLKEHTSSILCCTWSGLGRPLASADKNGVVCIWT* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2395 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 476 IPR001680 GO:0005515
Mtr3g2395 509 SUPERFAMILY WD40 repeat-like 212 508 IPR036322 GO:0005515
Mtr3g2395 509 CDD WD40 217 508 - -
Mtr3g2395 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 262 IPR001680 GO:0005515
Mtr3g2395 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 347 IPR001680 GO:0005515
Mtr3g2395 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 339 - -
Mtr3g2395 509 Pfam Autophagy protein 16 (ATG16) 43 168 IPR013923 -
Mtr3g2395 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 388 IPR001680 GO:0005515
Mtr3g2395 509 Coils Coil 164 184 - -
Mtr3g2395 509 Gene3D - 352 509 IPR015943 GO:0005515
Mtr3g2395 509 Coils Coil 128 155 - -
Mtr3g2395 509 ProSitePatterns Trp-Asp (WD) repeats signature. 366 380 IPR019775 -
Mtr3g2395 509 PANTHER AUTOPHAGY PROTEIN 16-LIKE 3 509 IPR045160 GO:0000045
Mtr3g2395 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 430 IPR001680 GO:0005515
Mtr3g2395 509 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
Mtr3g2395 509 ProSitePatterns Trp-Asp (WD) repeats signature. 240 254 IPR019775 -
Mtr3g2395 509 Gene3D - 41 351 IPR015943 GO:0005515
Mtr3g2395 509 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 3 509 - -
Mtr3g2395 509 Coils Coil 44 64 - -
Mtr3g2395 509 SMART WD40_4 341 379 IPR001680 GO:0005515
Mtr3g2395 509 SMART WD40_4 298 338 IPR001680 GO:0005515
Mtr3g2395 509 SMART WD40_4 424 467 IPR001680 GO:0005515
Mtr3g2395 509 SMART WD40_4 470 509 IPR001680 GO:0005515
Mtr3g2395 509 SMART WD40_4 214 253 IPR001680 GO:0005515
Mtr3g2395 509 SMART WD40_4 382 421 IPR001680 GO:0005515
Mtr3g2395 509 SMART WD40_4 256 295 IPR001680 GO:0005515
Mtr3g2395 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 258 - -
Mtr3g2395 509 PRINTS G protein beta WD-40 repeat signature 240 254 IPR020472 -
Mtr3g2395 509 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Mtr3g2395 509 PRINTS G protein beta WD-40 repeat signature 366 380 IPR020472 -
Mtr3g2395 509 Coils Coil 79 124 - -
Mtr3g2395 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 477 509 - -
Mtr3g2395 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 477 509 IPR001680 GO:0005515
Mtr3g2395 509 Pfam WD domain, G-beta repeat 343 379 IPR001680 GO:0005515
Mtr3g2395 509 Pfam WD domain, G-beta repeat 216 253 IPR001680 GO:0005515
Mtr3g2395 509 Pfam WD domain, G-beta repeat 302 338 IPR001680 GO:0005515
Mtr3g2395 509 Pfam WD domain, G-beta repeat 474 508 IPR001680 GO:0005515
Mtr3g2395 509 Pfam WD domain, G-beta repeat 446 467 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2395 Mtr-Chr3 37805864 37809126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2395 305 508 Miscellaneous Gene Families AT5G08390 19.512 4.20e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2395 K17890 - gmx:100778336 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2395 3 37805864 37809126 Mtr3g2395 3 37805864 37809126 ECH