Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2378 ATGCTAAAATCAACATTCACACCCATTTTTTGTGCACTAGCGCCCAAACCAAAACCATCAACCCGCGTAATCACAAATACTTTTTCAAACAGCACATCAACTGTTCGACAAAACTCCTCACTCAAAAACAACCCAACCATCACCCCTTCTTCAGCTTACATTCACCTCCCTTTCTGTCGTAAACGCTGCCACTACTGCGACTTCCCCATCGTCGCTCTCGGCTCCGCTTCAACACAGACACACGACGACCCGCGTGTCATAAACTACATTCAATGGCTCTGCAGAGAAATCAATGCAACTAAAATAGAAGATGAACTTGATTCTGCAAAGACGCCGCTTAAGACGGTGTTTTTCGGTGGTGGGACGCCGTCTCTGGTTCCTCCAAGTATGGTTGGAACGGTTTTAGAGACGCTGAAGATGAAATTTGGGGTGAGTGAAAGTGCTGAAATTTCGATGGAAATGGACCCGGGTACGTTTGATTATAAGAAGATGGAAGAGATGATGTTGTTGGGAGTTAACAGAGTTTCTTTAGGAGTTCAAGCATTTCAGGAGAAGCTGTTGAAGAGTTGTGGGAGGGCACATGGTTTGGAAGAGGTTCATGAGGCTATTGATATTGTTAAAAAGTGTGGGGTTGAGAATTGGAGTATTGATCTTATTGCTTCATTGCCTCATCAGACTAGTGAAATGTGGGAGGAAAGTTTAAGGCTCGCCATTGAGGCACGGCCAACTCATGTTTCTGTTTATGATCTGCAAATTGAACAAGGCACAAAATTTGGAAGGCTGTATTCACCAGGAGAATTTCCATTGCCTTCTGAGACACAATCCGCTGATTTTTATACGATGGCTTCAAGGATGCTTCGTGATGCCAATTATAGTCATTACGAAATCAGCAGCTACTGCAAGAGTGGTTATGAGTGTAGACACAACTTTACCTATTGGAAGTACAAGCCTTTCTATGCCTTTGGCCTCGGCTCTACTAGTTTTATTGGTGGTTTGAGGTTTTCAAGACCCAGGAAGGTGAATGAGTACATGAAATTTGTGGAAAATCTGGAAAATGGATCAGTAAATAGCTCAATTGATGACAACATTAATAGCAAGGACAAAGCATTGGATGTTGTGATGCTGTCCTTGAGAACAGCAAGAGGTCTAGACTTGAAGCATTTCCAAGAATCATTTGGCAGCTCTCTGGTTCTCTCTCTGGTTGAGGTTTATAAACCTTATGTTGAGAGTGGGCATGTGGTTTTCTTGGACGAGCAAAGGAGAGCTGTTAGAATAGACGACATCAACAATTCTCTTTTGGACGAAACTGATTTAGAAAGGAGAGTGGCCTACATGAGGCTAAGTGATCCAAATGGTTTCCTTTTATCAAATGAGTTAATAGCCCTTGCTTTTGGGGTTATTGACTCTTGGAAGGATTATCCTTCTGCACTCCAAGAAGCTACCTGA 1446 0.4281 MLKSTFTPIFCALAPKPKPSTRVITNTFSNSTSTVRQNSSLKNNPTITPSSAYIHLPFCRKRCHYCDFPIVALGSASTQTHDDPRVINYIQWLCREINATKIEDELDSAKTPLKTVFFGGGTPSLVPPSMVGTVLETLKMKFGVSESAEISMEMDPGTFDYKKMEEMMLLGVNRVSLGVQAFQEKLLKSCGRAHGLEEVHEAIDIVKKCGVENWSIDLIASLPHQTSEMWEESLRLAIEARPTHVSVYDLQIEQGTKFGRLYSPGEFPLPSETQSADFYTMASRMLRDANYSHYEISSYCKSGYECRHNFTYWKYKPFYAFGLGSTSFIGGLRFSRPRKVNEYMKFVENLENGSVNSSIDDNINSKDKALDVVMLSLRTARGLDLKHFQESFGSSLVLSLVEVYKPYVESGHVVFLDEQRRAVRIDDINNSLLDETDLERRVAYMRLSDPNGFLLSNELIALAFGVIDSWKDYPSALQEAT* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2378 481 ProSiteProfiles Radical SAM core domain profile. 44 292 IPR007197 GO:0003824|GO:0051536
Mtr3g2378 481 SMART MiaB 49 281 IPR006638 GO:0003824|GO:0051536
Mtr3g2378 481 SFLD HemN-like, clustered with heat shock genes 49 418 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Mtr3g2378 481 Pfam Radical SAM superfamily 54 236 IPR007197 GO:0003824|GO:0051536
Mtr3g2378 481 Gene3D tm_1862 like domain 57 267 IPR023404 -
Mtr3g2378 481 PANTHER RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL 34 466 - -
Mtr3g2378 481 TIGRFAM hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 51 412 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Mtr3g2378 481 SFLD Radical SAM 49 418 IPR007197 GO:0003824|GO:0051536
Mtr3g2378 481 SUPERFAMILY Radical SAM enzymes 49 418 - -
Mtr3g2378 481 CDD Radical_SAM 59 269 - -
Mtr3g2378 481 PANTHER COPROPORPHYRINIGEN III OXIDASE 34 466 IPR034505 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2378 - K07739 gmx:100779022 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2378 3 37613410 37615502 Mtr3g2378 3 37613410 37615502 ECH