Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2319 ATGGACCAATTCAACAACGTTGATCTCGAATTCGCTAACTTCGAAGATTACGTCGAATTCGAATTCTCTGATTTCGAAGACGAAGAACAACAAACCGTCCCAGAAAATCCTCCTCGCCGTAACACCTACAATACCGACTCCGACTCCGACTCCGACTGCGAAGACGATTTTCAAACGAGTAATGTAAAGACTGATACTTCAGCTTTCGAAGCACGAAACGGGAAAGATATTCAAGGAATTCCATGGGAGAAGCTTAATTATAGTAGAGATGAATATCGTGAAACTCGTTTGAAACAGTATAAGAACTACGAATGTCTCACGCGCTCTCGTGAGGACCTTGACAAGGAATGCTTGGAAGTGGAGAAAGGAAATTCGTTCTATGATTTTCAGTTCAATACCAGGCTTGTCAAGTCAACAATTGCGCATTTTCAGCTGAGGAATCTGTTGTGGGCAACATCAAAGCATGATGTTTACCTTATGCAAAACTACTCTGTGATGCATTGGTCCTCATTACTACAAAGGGGTAAAGAAGTGCTTAATGTGGCAAAACCGGTTATTCCAACCCTTCAGAAGCATTGTGGATTAGCCCACCCTGTCTCGCGAGTGCAAATTAGCACCATGGCTGTTAAGGAAAACTTGATGGTGGCAGGTGGTTTCCATGGGGAGCTTCTTTGCAAGAATTTGAATCATTCTGGAGTTGCATTCTGCAGTAAAATAACTACAGATGATAGTGCTATAACCAACGCAGTGGATGTTTTCCGCAATCCCAGTGGGTCGTTGAGGGTAATCGCAGCAAATAATGATTCCCAAGTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTGGGTTGTTTCAAGTATGATTGGTCTGTCAATAATGCTTCTGTTAGTCCAGATGGAAAGTTGTTAGCTGTTCTTGGGGACAGTACTGAGGGCCTGATAGCTGATGCTAATACCGGGAAGGTCACTGGAAACCTAAAAGGGCACTTGGATTATTCTTTCTCATCTGCTTGGCACCCCAATGGACAAATATTGGCTACTGGGAATCAGGACACAACATGCAGGTTGTGGGACATAAGAAATCTTTCCGAGTCCATAGCGGTATTAAAGGGAAGAATGGGTGCAATAAGGTCCTTAAAATTCACATCAGATGGAAAGTTTTTGGCCATGGCTGAGCCAGCAGACTTTGTCCATATTTTTGATTCACATTCTGGTTATGTACAAAGTCAAGAGATTGATATATTTGGTGAAATTGCTGGTTTATCTTTTAGCCCTGACACAGAGGCTCTGTTTGTCGGTGTGGCTGACCGAACCTACGGTAGCTTGTTAGAGTTCACGAGAAAGCATTATTATCAGTATCTGGACTCGATGATTTAA 1377 0.427 MDQFNNVDLEFANFEDYVEFEFSDFEDEEQQTVPENPPRRNTYNTDSDSDSDCEDDFQTSNVKTDTSAFEARNGKDIQGIPWEKLNYSRDEYRETRLKQYKNYECLTRSREDLDKECLEVEKGNSFYDFQFNTRLVKSTIAHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLQRGKEVLNVAKPVIPTLQKHCGLAHPVSRVQISTMAVKENLMVAGGFHGELLCKNLNHSGVAFCSKITTDDSAITNAVDVFRNPSGSLRVIAANNDSQVRVFDAENFASLGCFKYDWSVNNASVSPDGKLLAVLGDSTEGLIADANTGKVTGNLKGHLDYSFSSAWHPNGQILATGNQDTTCRLWDIRNLSESIAVLKGRMGAIRSLKFTSDGKFLAMAEPADFVHIFDSHSGYVQSQEIDIFGEIAGLSFSPDTEALFVGVADRTYGSLLEFTRKHYYQYLDSMI* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2319 458 Gene3D - 207 452 IPR015943 GO:0005515
Mtr3g2319 458 Pfam WD domain, G-beta repeat 321 358 IPR001680 GO:0005515
Mtr3g2319 458 PANTHER OS03G0386000 PROTEIN 1 457 - -
Mtr3g2319 458 SMART WD40_4 319 358 IPR001680 GO:0005515
Mtr3g2319 458 SMART WD40_4 221 275 IPR001680 GO:0005515
Mtr3g2319 458 SMART WD40_4 362 401 IPR001680 GO:0005515
Mtr3g2319 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 367 IPR001680 GO:0005515
Mtr3g2319 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 361 - -
Mtr3g2319 458 SUPERFAMILY WD40 repeat-like 188 438 IPR036322 GO:0005515
Mtr3g2319 458 MobiDBLite consensus disorder prediction 23 61 - -
Mtr3g2319 458 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 457 - -
Mtr3g2319 458 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2319 Mtr-Chr3 36926036 36931429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2319 308 438 Miscellaneous Gene Families AT5G08390 30.986 1.68e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2319 - - gmx:100775453 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2319 3 36926036 36931429 Mtr3g2319 3 36926036 36931429 ECH