Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2308 ATGGCCATGGCTATGTCTTCTTTCCGCATTGTATTTCGTCACATACTACACACTAAAATCAACAACCGTTTCTTCACTCCACCACCTCGCACCACGTGGCGTCACTCTCTTCTTTCTTCTCGCATTTCATCTTCAACTAATTACAGTTACAACGTTATCACCAACAAAGACGAACGCTTACTCGAACAAATCGAGAACGATAACAACAACACCAACGTTGTTGCAAACTCAACAACAATTGCAGCCATTGTAACATCCCTAGGCGGTCCCCCAGCCGCCGTCGGAATCGTTCGCCTTTCAGGTCCGCACGCGGTGTCTATCGCGGGTCGAGTTTTCCGACCCGCGAGAAACACGTGGCGGCCTACTAGTCATGTTGTTGAATACGGTGTCGTTTTGGATTCCGATGGAAATGTTGTTGACGAGGTTATAGCGGTGCCGATGTTAGCACCGAGGTCGTATACTCGTGAAGATGTTGTTGAACTTCAGTGTCATGGGAATGAAGTGTGTTTGCGTCGTGTGCTAAGGATTTGTTTAGAAGCTGGAGCAACACTTGCTCAACCAGGAGAGTTTACTCTTCGTGCTTTTCTAAATGGTCGTTTGGATCTCTCTCAGGCTGAAAATGTTGGAAAACTGATTGCAGCCAAATCTGTGGCTGCTGCCGATGCAGCACTGGAAGGAATCCAGGGTGGTTTCTCTTCTCTTGTCAGATCATTGAGAAATCAGTGCATTGACTTACTCACTGAGATTGAAGCTCGTTTAGATTTCGAAGATGAGATGCCACCTCTAGATTTGAATGGGATTATGGATAAAATACACCATATGTCACAAGATGTTGAGAATGCATTGGAAACGGCAAATTATGACAAGCTTCTGCAATCTGGATTACAGATAGCAATTGTTGGCCGTCCTAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGAGCAATAGTTACTGAAATTGCTGGAACAACTCGAGATGTGATTGAAGCAAGTATCAACATTAACGGCATCCCCATAACCCTTCTTGATACTGCAGGCATCAGGGACACTGATGACATTGTGGAAAAAATTGGTGTAGAGCGATCTGAAGCTGTTGCTAGAGGTGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACTTCTGAAGACACCAAACTTCTTGAAAGGATTCAATCCGCTAAGGAATCAACTGGATCTTCAACCCCAGTAATCCTTGTGGTCAACAAGATAGATTGTAAGCCTTGTGCAGAGACTGAATGGGACAAAGGAATGCACAGTCACAAAATTTTCAGCAAACAAGTGTTTACATGTGCTGTAACCAGTCAAGGATTACAAGACTTAGAGAGGGCAGTCTTAGAGATTGTGGGTATGGATGGCATTGCTTCTGGGGGTCGCAGATGGACCGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGTGAGATTACAATCATCAATAAAGGAAGAACTACCTATGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCACTTGGACAGATAAGTGGGGAAGATATATCCGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAA 1632 0.4387 MAMAMSSFRIVFRHILHTKINNRFFTPPPRTTWRHSLLSSRISSSTNYSYNVITNKDERLLEQIENDNNNTNVVANSTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRVFRPARNTWRPTSHVVEYGVVLDSDGNVVDEVIAVPMLAPRSYTREDVVELQCHGNEVCLRRVLRICLEAGATLAQPGEFTLRAFLNGRLDLSQAENVGKLIAAKSVAAADAALEGIQGGFSSLVRSLRNQCIDLLTEIEARLDFEDEMPPLDLNGIMDKIHHMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASININGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKESTGSSTPVILVVNKIDCKPCAETEWDKGMHSHKIFSKQVFTCAVTSQGLQDLERAVLEIVGMDGIASGGRRWTVNQRQCEQLVRTKEALVRLQSSIKEELPMDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2308 543 TIGRFAM small_GTP: small GTP-binding protein domain 295 424 IPR005225 GO:0005525
Mtr3g2308 543 PRINTS Transforming protein P21 ras signature 295 316 - -
Mtr3g2308 543 PRINTS Transforming protein P21 ras signature 335 357 - -
Mtr3g2308 543 PRINTS Transforming protein P21 ras signature 407 420 - -
Mtr3g2308 543 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 92 543 IPR004520 GO:0003924|GO:0005525|GO:0006400
Mtr3g2308 543 Pfam 50S ribosome-binding GTPase 296 417 IPR006073 GO:0005525
Mtr3g2308 543 Pfam MnmE helical domain 202 540 IPR025867 -
Mtr3g2308 543 Gene3D tRNA modification GTPase MnmE domain 2 200 543 IPR027368 -
Mtr3g2308 543 Gene3D - 295 471 IPR027417 -
Mtr3g2308 543 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 294 464 IPR031168 -
Mtr3g2308 543 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 77 543 - -
Mtr3g2308 543 Gene3D Probable tRNA modification gtpase trme; domain 1 64 199 IPR027266 GO:0005515
Mtr3g2308 543 Pfam GTP-binding protein TrmE N-terminus 79 199 IPR018948 -
Mtr3g2308 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 459 IPR027417 -
Mtr3g2308 543 CDD trmE 292 464 IPR031168 -
Mtr3g2308 543 Hamap tRNA modification GTPase MnmE [mnmE]. 78 543 IPR004520 GO:0003924|GO:0005525|GO:0006400
Mtr3g2308 543 PANTHER TRNA MODIFICATION GTPASE GTPBP3 77 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2308 Mtr-Chr3 36799402 36804804 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2308 K03650 - gmx:100818096 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2308 3 36799402 36804804 Mtr3g2308 3 36799402 36804804 ECH