Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2294 ATGGATGCACAAGCGGGTTTATCACTGGGGTTAAACGCTACCATGCCATCTCCAACAAATTCATCAAATGGGTCACTCACTGATAACTCTTTTTCATTCCATTTGAATTCAAAACCAAACCCTTCTCTTTCCTGGCGTTTACTTCATGAAAAACCAGACAACAATGTTCATCTTAATCTCATCAAACAAGAACAGGAACAAGATGAAGTTGTTGATGGTGTTGGTGAAGAAGAAGGTGAAACAATTGATTTTATGGGTAGACCTATTTGTTTCAAGAGGAGATTAGAGGAAGAAACACAACAAAGTTTTGTTCCGGCGAAGCGTGTTGCGGTGGATTCTAAGGCTGTGAGTTGGGGAAATCAACCTTTGAGTGTAGCTGATCCTGAAATATTTACAATTATGGAGAAGGAAAAGTTGAGACAGTTTAAAGGAATTGAATTAATTGCTTCTGAGAATTTTGTTTGTAGGGCTGTGATGGAAGCACTTGGTAGTCATTTGACTAATAAGTATTCAGAGGGAATGCCGGGAGCGAAATATTATACCGGTAATCAGTATATCGATCAGCTTGAGTTTCTATGTTGTGAGCGTGCATTGAATGCTTTTCATCTTGATTCAAGTAATTGGGGTGTTAATGTTCAGCCTTATTCATGCACTTCAGCTAATTTTGCTGTTTATACTGGTCTTTTGAATCCTGGGGATAGGATTATGGGGTTGGATTCGGCGTCTGGTGGACATTTGAGTCATGGTTATTATACTCATGGTGGGAAGAAGGTTTCGGCGGCTTCTATATTTTTTGAGACTTTGCCTTATAAGGTGAATCCATTGACTGGTTATATTGATTATGATAAGGTTGAGGAGAAAGCAGTGGATTATAGGCCGAAGATACTTATTTGTGGTGGTAGTTCTTATCCTAGAGAATGGGATTATGCGAGGTTTAGGAAGATTGCTGATAAATGTGGAGCTGTTTTGATGTGTGATATGGCTCATATTAGTGGACTTGTTGCGGCTAGGGAAGTTGCGAGTCCATTTGATTACTGTGATATTGTCACCTCAACAACCCACAAAAGTCTTCGAGGTCCAAGAGGAGGTATTGTCTTTTACCGAAAAGGGCCAAAACCAAGGAAGCAAGGCTTTGTTCTTAATCACGGAGATGATAATAGTAATTATGATTTTGAGGAGAAGATAAACTTTGCTTTATACCCATCGTTACAAGGAGGTCCCCACAACAATCACATTGCAGCTCTTGCCATAGCTTTGAAACAAGTTGCGACTCCAGAGTATAAAGCATACATGCAGCAGGTGAAGAGAAATGCACAGGCATTAGCAACTGCGTTGTTGAAAAGAAAATGCAGATTGGTTACTGATGGTACTGACAATCATCTTTTGCTCTGGGATATAACTGCACTCGGTTTAATTGACAGAAACTATGAGAAGGTTTGTGAGGCGTGTCACATCACTCTCAATAAGTGTGCCATTTATGGTTCTATTTCTTCTGGAGGAGTGAGAATCGGAACTCCTGCAATGACATCAAGAGGCTGTTTAGAGGACGATTTTGAGACTATGGCCGATTTTCTTCTGAGGGCAGCTCAGATTACAAGCATAATACAGAGGGAACATGGTAAATCATGCAAAGATTTTCTCAAGGGTCTTCAGAGTAATAAAGATATTTTTGACCTCAGAAATCGGGTTGAGACATTTGGCTCCCAGTTTGAAATGCCAGGATTCAATTATTGA 1734 0.3997 MDAQAGLSLGLNATMPSPTNSSNGSLTDNSFSFHLNSKPNPSLSWRLLHEKPDNNVHLNLIKQEQEQDEVVDGVGEEEGETIDFMGRPICFKRRLEEETQQSFVPAKRVAVDSKAVSWGNQPLSVADPEIFTIMEKEKLRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQYIDQLEFLCCERALNAFHLDSSNWGVNVQPYSCTSANFAVYTGLLNPGDRIMGLDSASGGHLSHGYYTHGGKKVSAASIFFETLPYKVNPLTGYIDYDKVEEKAVDYRPKILICGGSSYPREWDYARFRKIADKCGAVLMCDMAHISGLVAAREVASPFDYCDIVTSTTHKSLRGPRGGIVFYRKGPKPRKQGFVLNHGDDNSNYDFEEKINFALYPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKRNAQALATALLKRKCRLVTDGTDNHLLLWDITALGLIDRNYEKVCEACHITLNKCAIYGSISSGGVRIGTPAMTSRGCLEDDFETMADFLLRAAQITSIIQREHGKSCKDFLKGLQSNKDIFDLRNRVETFGSQFEMPGFNY* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2294 577 Gene3D - 152 432 IPR015421 GO:0003824
Mtr3g2294 577 MobiDBLite consensus disorder prediction 10 26 - -
Mtr3g2294 577 CDD SHMT 127 532 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Mtr3g2294 577 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 99 576 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Mtr3g2294 577 MobiDBLite consensus disorder prediction 1 26 - -
Mtr3g2294 577 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 347 363 IPR019798 GO:0030170
Mtr3g2294 577 SUPERFAMILY PLP-dependent transferases 118 575 IPR015424 -
Mtr3g2294 577 Pfam Serine hydroxymethyltransferase 124 524 IPR039429 -
Mtr3g2294 577 Gene3D Aspartate Aminotransferase, domain 1 127 573 IPR015422 GO:0003824
Mtr3g2294 577 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 99 576 - -
Mtr3g2294 577 Hamap Serine hydroxymethyltransferase [glyA]. 122 574 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2294 Mtr-Chr3 36623006 36628578 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2294 K00600 - gmx:100776419 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2294 3 36623006 36628578 Mtr3g2294 3 36623006 36628578 ECH