Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2293 ATGGCTACTTCTCTCTATCAATCTCTATTGGCTTGTTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTCTCTTCAAAATCTCCAAAACCACCCAATTTCGTTCATTTTCCATCTCGCCCCTTTTACGCCTCCAACACCATCTTAGGGTTTCCAACTCTCAATTCAACCTCCTCCCTCTTCGCTTCCAAAGATTCCTTTCCAACTACAAATGATAAAACAGACGAGACGCGGAATGGTGAAGATAAACAAGATTTACCAAGCTTATTGGTCCTTATTAAAGCATACAAGAAAGCCTTTCTTAACAGCGATAGGAAGACGGCATTGTTGATTGAAGAAATTATACACTCAAAGGCAAATGAAAGGAATAAATTGATTCAAAAAGCATCTACTCTATCGGTGGATAAAGTTTCTTGTAAGGAGCAATATCTTCGTTTGCAAGCTGATTTTGATAACTTTAGGAAAAGATGTGAGAAGGAAAGAATTAGCATTCAATCGGATGCCCAACAAGAATTCGTTAAAAAACTTCTGTTGATGGTGGACAGTTTTGAGAGAGTTAAACAACAGATTGAAGCGGAAACGGAGAAAGAGAAGAAGATTGATGCGAGCTATCAAAGTCTTTACAAGCAATTTGTAGAGACTTTAAGGAGTCATCATGTTTCTGTGGTTGCAACAGTGGGCAAGCCTTTTAATCCCTTGCTACATGAAGCCGTTGGACGTGAGGAGTCCGAAGTGTTTAAGGAAGGGATTATAATTAAAGAATCCCGTCGAGGTTTCATGCTCAAAGATAAGGTTGTAAGGCCAGCACTTGTGAAGGTTTCCTTAGGTCCCGGGAATAAGAAATCTTCAGTGGCACCTACCCAGTCCTTGGAGCAGCCATCAACAGCTGCTAGAATTGATGAAAGATAA 915 0.3978 MATSLYQSLLACSSSSSSSSSSSSSFSSKSPKPPNFVHFPSRPFYASNTILGFPTLNSTSSLFASKDSFPTTNDKTDETRNGEDKQDLPSLLVLIKAYKKAFLNSDRKTALLIEEIIHSKANERNKLIQKASTLSVDKVSCKEQYLRLQADFDNFRKRCEKERISIQSDAQQEFVKKLLLMVDSFERVKQQIEAETEKEKKIDASYQSLYKQFVETLRSHHVSVVATVGKPFNPLLHEAVGREESEVFKEGIIIKESRRGFMLKDKVVRPALVKVSLGPGNKKSSVAPTQSLEQPSTAARIDER* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2293 304 Pfam GrpE 117 276 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr3g2293 304 Gene3D - 107 218 IPR013805 -
Mtr3g2293 304 Hamap Protein GrpE [grpE]. 66 277 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr3g2293 304 Coils Coil 175 195 - -
Mtr3g2293 304 MobiDBLite consensus disorder prediction 278 304 - -
Mtr3g2293 304 ProSitePatterns grpE protein signature. 232 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr3g2293 304 CDD GrpE 142 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr3g2293 304 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 127 220 IPR013805 -
Mtr3g2293 304 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 223 277 IPR009012 GO:0006457
Mtr3g2293 304 Gene3D Head domain of nucleotide exchange factor GrpE 222 276 IPR009012 GO:0006457
Mtr3g2293 304 PANTHER GRPE PROTEIN HOMOLOG 4 294 - -
Mtr3g2293 304 MobiDBLite consensus disorder prediction 13 34 - -
Mtr3g2293 304 PRINTS GrpE protein signature 146 162 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr3g2293 304 PRINTS GrpE protein signature 174 189 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr3g2293 304 PRINTS GrpE protein signature 229 244 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr3g2293 304 PRINTS GrpE protein signature 256 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mtr3g2293 304 MobiDBLite consensus disorder prediction 282 297 - -
Mtr3g2293 304 PANTHER GRPE PROTEIN 4 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2293 Mtr-Chr3 36615679 36618473 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2293 K03687 - gmx:100809893 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2293 3 36615679 36618473 Mtr3g2293 3 36615679 36618473 ECH