Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2289 ATGGAAAACGCCGACGCTTCCTCTGGTTTACACGACTTCCTCGAGCGCATGCGCCAACCCGCCGCCGCCGATTTCGTCAAAGCTATCAAAAGTTTCATAGTTTCGTTTTCAAATCATGGACCCGATCCTGAGAGAGACAGTGATGCCGTACAAGACTTTCTTGCTAATATGGAAGCTGCTTTCAAAGCTCATCCCCTTTGGGCCGGTTGCTCTGATGATGAACTCGAAAGTGCCGGCGAAGGTCTCGAGAAGTACGTTATGACAAAGTTGTTTCCCCGTGTATTTGCTTCAGTTCCAGATGATGTAAAACTTGATGAACAACTTTCAGAGAAGATGGCTTTGATTCAACAGTTTATTCGACCAGAAAATTTGGACATCAAGCCACCATTTCAGAACGAAACATCATGGTTGCTTGCTCAGAAAGAATTACAGAAGATCAACATGTACAAGGCACCAAGAGACAAACTTACTTGTATTCTAAACTGTTGCAAGGTTATTGGTAACTTGCTGCTTAATGCTTCTCTTGCTTCCAAAGATAATCCTCCTGGAGCTGATGAATTTCTTCCTGTGCTAATCTATGTTACCCTAAAGGCAAACCCTCCACAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGACGCCAATCTCGTTTGGTTGGGGAAGCATCATATTATTTTACAAACATGCTCTCTGCCGAATCCTTCATCTCAAACATTGATGCAAATGCCATTTCGATGGATGAAACTGAGTTTGAGAGAAACATGGAATTTGCTCGTGCTCTTCTTTCAGGGCTTTCAGTTGATACGCAAGATCCCAATTCACCTTATCAAAATCATGTACAGCATGACAAAAATAAAGCTCCATCATCTGATGCAAAATTAGAAAGTAAGAAAGTGACTTTTGCAAGTGAATCATCGATCGCAAAAGTTCCATCACTCTCAGATTTGGAGAATAAAGGGGCATGTATGATAATTAAGGAGGATAAGTTGAATGATGTTTTCAGGGAGTTTCCATATATGTTTGCTAGTGTAGGTGATCTTACAGTAAGTGATGTCGAAGACCTGCTAAAGAATTACAAACGATTAGTTTCCAAGTATGTGTGTCTTTCCAAAGGGTTAGGTGTCTCTTCTTCATCTCATCATCCATCCAATCCTCAAAATAATGCTCAGCAGGACCATGTTGAAACCCTTTCCAAAGGGTTAGCCTCCTCTTCTTCCTCTCATCATCCATCCAATCCTCAAAATAATGCTCAGGGCCATGTTGAGAGTGAGACCACAATAGATTCTTCAGACAATGGACCTGTAGCTTCCAACGAAAAATCAGAAAAATCTCTTGATACATCAGAGGATAACTCAGATCCTGAGGAGAAAAAAAGTGATTCAGGTTTGCCACAGGATGAGGCAGCTGCACCAGAGGGTGGTGCCCCCTCTTAA 1437 0.4182 MENADASSGLHDFLERMRQPAAADFVKAIKSFIVSFSNHGPDPERDSDAVQDFLANMEAAFKAHPLWAGCSDDELESAGEGLEKYVMTKLFPRVFASVPDDVKLDEQLSEKMALIQQFIRPENLDIKPPFQNETSWLLAQKELQKINMYKAPRDKLTCILNCCKVIGNLLLNASLASKDNPPGADEFLPVLIYVTLKANPPQLHSNLLYIQRFRRQSRLVGEASYYFTNMLSAESFISNIDANAISMDETEFERNMEFARALLSGLSVDTQDPNSPYQNHVQHDKNKAPSSDAKLESKKVTFASESSIAKVPSLSDLENKGACMIIKEDKLNDVFREFPYMFASVGDLTVSDVEDLLKNYKRLVSKYVCLSKGLGVSSSSHHPSNPQNNAQQDHVETLSKGLASSSSSHHPSNPQNNAQGHVESETTIDSSDNGPVASNEKSEKSLDTSEDNSDPEEKKSDSGLPQDEAAAPEGGAPS* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2289 478 SMART vps9_2 135 255 IPR003123 -
Mtr3g2289 478 Gene3D VPS9 domain 99 265 IPR037191 -
Mtr3g2289 478 MobiDBLite consensus disorder prediction 273 293 - -
Mtr3g2289 478 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Mtr3g2289 478 Gene3D - 17 97 - -
Mtr3g2289 478 MobiDBLite consensus disorder prediction 376 478 - -
Mtr3g2289 478 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Mtr3g2289 478 PANTHER BNAC09G47180D PROTEIN 1 397 - -
Mtr3g2289 478 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 397 IPR045046 GO:0005085|GO:0016192
Mtr3g2289 478 MobiDBLite consensus disorder prediction 376 442 - -
Mtr3g2289 478 MobiDBLite consensus disorder prediction 443 464 - -
Mtr3g2289 478 SUPERFAMILY VPS9 domain 10 257 IPR037191 -
Mtr3g2289 478 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2289 Mtr-Chr3 36571399 36575485 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2289 K20131 - gmx:100810958 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2289 3 36571399 36575485 Mtr3g2289 3 36571399 36575485 ECH