Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2274 ATGCATCCTTTCTGCTGCGTCTCCGCTATTTCCGACCAAGCTTCGCCGGTGAAACCTCCGTCTCCGTTCACTGACTTCACCATGCCTCCTCCTCCACCACCATCTGTCGCTGTTAGATCCGATTCGCCGGCTCCGATTCATAGTCACAGCCATAGCAACGGTTGTCAGCGGGAACAGCCGGCGGTGGTTGTTGATTTGAAGATCAACGACCTCGTCGGAAATGGAATCTCCGGTATACTGTATAAATGGGTGAATTACGGTAAAGGATGGAGACCTCGATGGTTTGTTCTTCAAGATGGAGTTCTCTCTTACTACAAGATTCATGGACCTGATAAAATTATCGTTAATCATGAAACTGAAAAAGGCTCCAAAGTTATCGGCGATGAATCTATTCGAAGGATCAATCGCAATCGTAATTCTTATCCCTATCAACATCGTCGTAAACCTTTCGGTGAAATCCATCTCAAGGTCTCAACAATTCGCGAAAGTAAATCGGATGATAAGAGATTTTCGGTGTTCACGGGAATGAAGAGACTTCATTTGAGAGCAGAGTCACGTGAAGATCGTGTGGCGTGGATGGAAGCTTTGCAAGCAGTGAAAGATATGTTCCCTAGAATTTCCAACAGTGAATTAATGGCTCCTGTGGATAACGTAACAATTTCAACTGAGAAATTGAGAAATCGGCTTTTGGAAGAAGGAACGAGTGAAGCAGCTATTCAGGACAGTGAACAAATTATGAAAACTGAGTTTGCAGCGTTACAGAATCAATTAGTGTTGCTTAAGCAGAAGCATTCTATCCTCATTGACACGTTACGCCATCTAGAGACAGACAAGGTCGATCTGGAGAATACAGTTGTTGATGAGAGCCAAAGACAGTGGAATGATCAAGAAGATTCCTCTGGATTGCAAGAAAAATTTAGTGAAGGAAGTGCAAGTGAATCTGAGGATGATAATGAGAGAAATGATGTGGCAGAGGAAGAAACAGATGACGATGACAATGTCTTTTTTGATACCCGTGATATTCTATCATCAAGTTCTTTTAAAAGTAATGGGTCTGATTATAGAGTATCATCTTTCTCATCTGATAATGATGCATTTGAATCAGAGGACGATGTAGATTCTTCAAATAGATATATTGGAACCAACCACCCTCGTGTTAAGCGGCGAAAGAAATTGCCAGACCCTGTAGAGAAAGAGAAAGGTGTCAGTCTTTGGTCAATGATCAAGGATAATATAGGGAAAGATCTAACAAAAGTTTGCCTTCCTGTTTACTTTAATGAGCCTCTCTCCTCCCTGCAAAAGTGCTTTGAAGAAATGGAGTACTCATATCTGCTTGACCAAGCATATGAATGGGGAAAAAGGGGTGATAGCCTCATGAGGATTCTCTATGTCGCTGCTTTTGCTGTATCTGCCTATGCTTCAACCGAAGGAAGAATTTGCAAACCATTTAATCCATTACTTGGAGAAACATACGAGGCTAACTATCCAGATAAAGGCCTTCGCTTTTTCTCAGAGAAGGTCAGCCATCATCCTATGATAGTTGCATGTCACTGTGAGGGTACAGGATGGAAATTTTCGGGGGATAGCAACTTAAAAAGCAAATTTTGGGGCCGCTCAATTCAGCTTGACCCTGTCGGTACTTTGACTTTGGAATTTGATGATGGAGAGGTTTTCCAGTGGAGCAAGGTTACAACATCAATATACAATCTCATATTAGGAAAGCTTTACTGTGATCATTATGGTACGATGCGTATAGAGGGAAACCAAGAGTACTCGTGTAAGCTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCATCAGGTTCATGGTATAGTACAAGATAGGAACGGAAAAACAGTATCAACCTTGTTTGGAAAATGGGATGAAAGCATGCATTATGTTAATGGAGACTACACTGGGAAGGGGAAAGGTCATGAATCTTTGTCAGAGGCTCATCTACTCTGGAAGCGAAGCAAGGCTCCCATGTTTCCTACTAGATATAATTTCACTCGTTTTGCCATCACGTTAAATGAACTTACCCCTGGATTGAAGGAGAAATTGCCGCCAACAGATTCGAGGTTAAGACCAGACCAACGGTATTTAGAAAATGGGGAGTATGAGATGGCAAATTCAGAAAAGTTACGGCTTGAGCAACGGCAACGGCAGGCTCGGAAGATGCAAGAGAGCGGTTGGAGACCGCGGTGGTTTGCGAAGGATAAAGCTAGCGGGACATACCGCTATATGGGAGGGTATTGGGAGGCTCGAGAAAAAAGAAACTGGGACACATGTCCCGACATCTTTGGCCAAATTTCTCCAGATCATCTATCTGATGAAGTTCAAATTACATCTTAA 2358 0.4245 MHPFCCVSAISDQASPVKPPSPFTDFTMPPPPPPSVAVRSDSPAPIHSHSHSNGCQREQPAVVVDLKINDLVGNGISGILYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVNHETEKGSKVIGDESIRRINRNRNSYPYQHRRKPFGEIHLKVSTIRESKSDDKRFSVFTGMKRLHLRAESREDRVAWMEALQAVKDMFPRISNSELMAPVDNVTISTEKLRNRLLEEGTSEAAIQDSEQIMKTEFAALQNQLVLLKQKHSILIDTLRHLETDKVDLENTVVDESQRQWNDQEDSSGLQEKFSEGSASESEDDNERNDVAEEETDDDDNVFFDTRDILSSSSFKSNGSDYRVSSFSSDNDAFESEDDVDSSNRYIGTNHPRVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEEMEYSYLLDQAYEWGKRGDSLMRILYVAAFAVSAYASTEGRICKPFNPLLGETYEANYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFSGDSNLKSKFWGRSIQLDPVGTLTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIEGNQEYSCKLKFKEQSIIDRNPHQVHGIVQDRNGKTVSTLFGKWDESMHYVNGDYTGKGKGHESLSEAHLLWKRSKAPMFPTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQRQRQARKMQESGWRPRWFAKDKASGTYRYMGGYWEAREKRNWDTCPDIFGQISPDHLSDEVQITS* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2274 785 ProSiteProfiles PH domain profile. 73 201 IPR001849 -
Mtr3g2274 785 SMART PH_update 74 203 IPR001849 -
Mtr3g2274 785 MobiDBLite consensus disorder prediction 288 308 - -
Mtr3g2274 785 MobiDBLite consensus disorder prediction 13 54 - -
Mtr3g2274 785 MobiDBLite consensus disorder prediction 22 39 - -
Mtr3g2274 785 Gene3D - 74 203 IPR011993 -
Mtr3g2274 785 Coils Coil 271 291 - -
Mtr3g2274 785 CDD PH_ORP_plant 76 208 - -
Mtr3g2274 785 SUPERFAMILY Oxysterol-binding protein-like 398 779 IPR037239 -
Mtr3g2274 785 Coils Coil 708 728 - -
Mtr3g2274 785 MobiDBLite consensus disorder prediction 348 380 - -
Mtr3g2274 785 MobiDBLite consensus disorder prediction 288 335 - -
Mtr3g2274 785 Gene3D - 700 767 - -
Mtr3g2274 785 MobiDBLite consensus disorder prediction 318 334 - -
Mtr3g2274 785 MobiDBLite consensus disorder prediction 348 363 - -
Mtr3g2274 785 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 776 IPR000648 GO:0008289
Mtr3g2274 785 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 2 776 - -
Mtr3g2274 785 Gene3D - 489 669 - -
Mtr3g2274 785 Pfam Pleckstrin homology domain 81 197 - -
Mtr3g2274 785 Pfam Oxysterol-binding protein 403 758 IPR000648 GO:0008289
Mtr3g2274 785 SUPERFAMILY PH domain-like 76 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2274 Mtr-Chr3 36375344 36381961 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2274 K20456 - gmx:100137077 1383.62