Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2267 ATGGATTTAAATCATATCCAAATCGCTTTTCGTTATTGCATTCGCTTTAGATCAATTAAAAATGCAAAATCACTCCATTCTCACATAATTAAATCCGGTTTTTGTAATCACATTTTCATCTTAAACAACATGATCTCAGTTTATTCGAAATGTTCTAGTATCATTGATGCACGTAACATGTTCGACGAAATGCCTCACAGGAACATAGTTTCTTGGACTACAATGGTCTCTGTATTAACCAATTCCAGCATGCCCCATGAAGCTCTTAGTCTCTACAATGAGATGATAGAATCAAAAATTGAACAGCCGAATCAGTTTTTGTACTCTGCTGTTCTCAAAGCGTGTGGTCTTGTGAGAAATGTTGAATTGGGAAAGATGGTTCATTATCATATATTTCAAGCTAAGTTAGATGTTGATATTGTTCTGATGAATGCCCTTTTGGATATGTATGTGAAATGTGGAAGCTTGAGGGATGCTCAACGGGTTTTCTGTGAAATTCCGTGTAAAAATGCTACTTCATGGAACACACTCATTTTGGGGTATGCAAAACAAGGTTTGATTGATGATGCGATGAAACTGTTTGATAAAATGCCGGAACCGGATATTGTATCTTGGAACAGCATCATTGCTGGTCTTGTAGATAATGCTAGTTCACGTGCGTTGCGATTTGTTTCTATGATGCATGGGAAGGGCCTTAAAATGGACGAATTCACATTCCCAAGTGTGCTGAAAGCTTGCGGTTGCAGTGATGAATTAATGTTAGGAAGAGAGATTCATTGTTATATTATTAAGTCGGGGTTTGAGTCTAGCTGTTATTGTATATCGGCGTTGATTGATATGTATTCAAGTTGCAAGTTATTAAGTGAAGCAACAAAGATTTTTGATCAATACTTCAGGAACTCTTCTGTTTCGGAAAGCTTGGCACTATGGAATTCGATGCTTTCTGGGCATGTTGTCAATGGAGATTATGTTGAGGCTCTCAGTATGATTTCTCATATGCATCGTTCTGGTGTACGTTTTGATTTTTATACCTTCAGTATTGTTTTAAAGATCTGCATGAACTTTGATAACTTGAGTTTGGCATCTCAAGTGCATGGATTTGTCATCACTAGCGGATATGAGTTAGATTGTGTTGTTGGGAGCATTCTCATTGATATATATGCAAAACAGGGCAGTATTAACAATGCGTTAAGATTGTTTGAGAGGTTGCCAGATAAAGATGTTGTGGCTTGGTCGAGTTTGATTACTGGTTGTGCTAGATTCGGTTCAGATAAGTTAGCTTTTTCCCTTTTCATGGATATGATTCATTTGGGTCTTCAGATTGATCATTTTGTTATTTCAATTGTGCTAAAAGCTTGCTCAAGTTTGGCATCTCATCAACATGGCAAGCAAGTTCATTCTTTATGTCTTAAGAAGGGGTATGAATCAGAGGGAGTAGTTACAACTGCTCTGATTGATATGTATGCAAAATGTGGTGACATTGAGGATGCCTTATCTTTGTTTGGTTGTCTTTCGGAAATTGATACCATGAGTTGGACAAGTATTATCGTGGGATGTGCACAAAATGGAAGAGCAGAGGAAGCAATAAGTCTTCTGCATAAGATGATAGAATCTGGTACAAAGCCAAATAAAATCACCATTCTAGGTGTTCTCACTGCTTGTAGGCATTCTGGCCTAGTTGAAGAGGCATGGGATGTGTTTAATTCTATTGAAACAAATCATGGATTGATACCTTGCCCAGAACATTACAATTGTATGGTCGATATACTTGGTCAAGCAGGACGTTTTGAAGAAGCAGTAAAGTTGATTAGTGAAATGCCATTTAAGCCCGACAAAACTATATGGTCTTCCTTGCTTGGTGCCTGTGGAACTTACAAGAACAGAGATCTTGCAAATATTGTTGCCGAGCATCTCCTTGCTACCTCACCAGAAGATGTTTCTGTATACATAATGCTGTCAAATGTTTATGCAGCTCTTGGAATGTGGGATAGTGTAAGCAAAGTCAGAGAAACTGTAAAAAAAATCGGCAAAAAAAGAGCTGGAAAAAGCTGGATTGAGATCTCAAGTTGA 2070 0.3773 MDLNHIQIAFRYCIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASSRALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEEAVKLISEMPFKPDKTIWSSLLGACGTYKNRDLANIVAEHLLATSPEDVSVYIMLSNVYAALGMWDSVSKVRETVKKIGKKRAGKSWIEISS* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2267 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Mtr3g2267 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Mtr3g2267 689 Gene3D Tetratricopeptide repeat domain 254 359 IPR011990 GO:0005515
Mtr3g2267 689 Gene3D Tetratricopeptide repeat domain 123 253 IPR011990 GO:0005515
Mtr3g2267 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Mtr3g2267 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 609 IPR002885 -
Mtr3g2267 689 PANTHER BNAC03G28070D PROTEIN 82 684 - -
Mtr3g2267 689 PANTHER BNAC03G28070D PROTEIN 39 77 - -
Mtr3g2267 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Mtr3g2267 689 Pfam PPR repeat 482 504 IPR002885 -
Mtr3g2267 689 Pfam PPR repeat 275 296 IPR002885 -
Mtr3g2267 689 Pfam PPR repeat 142 167 IPR002885 -
Mtr3g2267 689 Pfam PPR repeat 582 606 IPR002885 -
Mtr3g2267 689 Pfam PPR repeat 173 199 IPR002885 -
Mtr3g2267 689 SUPERFAMILY TPR-like 87 670 IPR011990 GO:0005515
Mtr3g2267 689 Gene3D Tetratricopeptide repeat domain 360 477 IPR011990 GO:0005515
Mtr3g2267 689 Gene3D Tetratricopeptide repeat domain 1 122 IPR011990 GO:0005515
Mtr3g2267 689 Gene3D Tetratricopeptide repeat domain 481 689 IPR011990 GO:0005515
Mtr3g2267 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 39 77 - -
Mtr3g2267 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 82 684 - -
Mtr3g2267 689 Pfam E motif 625 686 IPR046848 -
Mtr3g2267 689 Pfam PPR repeat family 67 115 IPR002885 -
Mtr3g2267 689 Pfam PPR repeat family 406 454 IPR002885 -
Mtr3g2267 689 Pfam PPR repeat family 508 554 IPR002885 -
Mtr3g2267 689 Pfam PPR repeat family 309 352 IPR002885 -
Mtr3g2267 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Mtr3g2267 689 TIGRFAM PPR: pentatricopeptide repeat domain 583 606 IPR002885 -
Mtr3g2267 689 TIGRFAM PPR: pentatricopeptide repeat domain 309 341 IPR002885 -
Mtr3g2267 689 TIGRFAM PPR: pentatricopeptide repeat domain 173 198 IPR002885 -
Mtr3g2267 689 TIGRFAM PPR: pentatricopeptide repeat domain 511 543 IPR002885 -
Mtr3g2267 689 TIGRFAM PPR: pentatricopeptide repeat domain 70 104 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2267 Mtr-Chr3 36308404 36312316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2267 10 687 Glycoside Hydrolase AT3G49170 30.624 1.45e-112 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2267 - - mtr:MTR_3g072900 1375.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2267 3 36308404 36312316 Mtr3g2267 3 36308404 36312316 ECH