Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2235 ATGTTTTGCGGCGTAGTTAGCACTTCCTTCACTTCCATTTTACCCAGAAAACAACACCACTCCACACCCTTTTCCCCATTCAAATCCATTCAATGTTCTCTTCCAGGAGCTGTTGCTGAACCTAAAACAAATAATGCCACAGAACCTCTTTTGCTCAATGCAGTTCGTGGATTAGATGTCGAAAGACCTCCTGTTTGGCTTATGAGGCAAGCTGGGAGGTACATGAAGAGTTACCAAATCATCTGCGAAAAATATCCGTCATTCCGGGAAAGATCTGAAAATGTTGATCTCGTGGTTGAAATTTCATTGCAACCGTGGAAGGTTTTCCAGCCTGATGGGGTGATATTATTCTCAGACATTCTTACACCCCTATCTGGAATGAATATTCCATTTGACATTGTAAAAGGCAAGGGTCCTGTCATATTTGACCCAGTTCACTCCGCAGGCCAAGTTGATCAAGTGAGGGAGTTTATTCCCGAGGAATCAGTTCCATACGTTGGTGAAGCACTATCAATTTTGCGCAAAGAGGTAGATAATAAATCTGCAGTCCTTGGTTTTGTGGGTGCTCCGTTTACCCTGGCGTCGTATGTGGTTGAAGGCGGTTCATCAAAACATTTCTCTAAAATAAAGAGATTGGCATTCTCTGAACCAAAGATCCTTCACTCATTACTGCAAAAGTTTACAACATCAATGGCAAGATACATACAATACCAAGCTGACAATGGAGCGCAAGCTGTGCAGATATTCGATTCATGGGCAACGGAGCTTAGTCCAGTGGATTTTGAACGATTCAGTTTGCCATACTTGAAGCAAATTATCGACACTGTAAAGAAAAGCCATCCAGAACTCCCTCTTATCCTCTATGCAAGTGGATCAGGAGGCTTACTTGAGAGAATAGCATTGACCGGTGTGGATGTTGTTAGCTTGGATTGGACAGTCGATATGGCTGACGGTAGAAGGAGATTAGGACCAAATGTAGCTATCCAAGGTAATGTTGATCCTGGTGTTCTGTTTGGATCGAAAGAGCTGATTACAGATAGGATACACGATACTGTGAGAAAGGCTGGTAGAGGGAAACATATCCTAAACCTTGGTCACGGCATTGTAGTAGGTACTCCTGAGGAGAATGTAGCACATTTTTTTGAGGTTGCCAAAGGAATCAAATACTAA 1170 0.4274 MFCGVVSTSFTSILPRKQHHSTPFSPFKSIQCSLPGAVAEPKTNNATEPLLLNAVRGLDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWKVFQPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPVHSAGQVDQVREFIPEESVPYVGEALSILRKEVDNKSAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSEPKILHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFERFSLPYLKQIIDTVKKSHPELPLILYASGSGGLLERIALTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKELITDRIHDTVRKAGRGKHILNLGHGIVVGTPEENVAHFFEVAKGIKY* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2235 389 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC 25 389 - -
Mtr3g2235 389 Hamap Uroporphyrinogen decarboxylase [hemE]. 48 388 IPR006361 GO:0004853|GO:0006779
Mtr3g2235 389 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 64 73 IPR000257 GO:0004853|GO:0006779
Mtr3g2235 389 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 184 200 IPR000257 GO:0004853|GO:0006779
Mtr3g2235 389 TIGRFAM hemE: uroporphyrinogen decarboxylase 51 385 IPR006361 GO:0004853|GO:0006779
Mtr3g2235 389 Gene3D - 37 389 IPR038071 -
Mtr3g2235 389 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 25 389 - -
Mtr3g2235 389 CDD URO-D 52 385 IPR006361 GO:0004853|GO:0006779
Mtr3g2235 389 Pfam Uroporphyrinogen decarboxylase (URO-D) 50 385 IPR000257 GO:0004853|GO:0006779
Mtr3g2235 389 SUPERFAMILY UROD/MetE-like 50 387 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2235 Mtr-Chr3 35978082 35982490 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2235 K01599 - gmx:100800753 679.093