Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2223 ATGGCCGATCACTTAGCGAGAGCAGAAGATTTCGAGAAGAAAGCTGAGAAGAAGCTCAGCGGTTGGGGCTTATTCAGTTCCAAATACGATGACGCCGCCGATCTCTTCGATAAATCTGCTAATTCCTTCAAACTCGCTAAATCATGGGACAAAGCGGCAGCGACATACCTAAAGTTGGCGAATTGTCATTTGAAGATGGAAAGCAAGCATGAGGCTGCACAGGCTTATGTTGATGCTTCACATTGCTATAAAAAGACTAATATAAGTGAGGCTGTATCGTGCCTAGACCATGCTGTGAATCTTTTCTGTGATATTGGCAGACTCTCTATGGCTGCTAGATATTTGAAGGAAATTGCAGAGTTATATGAGTCCGAACAAAATATTGAGCAGGCTGTTGTTTACTTTGAAAAATCAGCTGATTTTTATCAAAATGAAGAGGTGACAACTTCTGCAAACCAGTGCAAGCAGAAAGTGGCCCAATTTTCTGCTCAGCTGGAACAATATCAGACATCTATTGATATTTATGAAGAGATTGCTCGCCAGTCTCTAAACAATAATCTGCTGAAGTACGGAGTTAAAGGCCATCTTCTCAATGCTGGCATTTGCCAACTCTGCAAAGGGGATCCTGTTGCCATAAGCAATGCTTTAGAGAGATATCAGGAATTAGATCCAACATTTTCAGGAACACGCGAGTATAGATTATTGGCGGATGTTGCTGCCGCAGTTGATGAAGAAGATGTTGGAAAGTTTACTGATGTCGTCAAGGACTTCGATAGCATGACCCCTCTGGATTCTTGGAAGACAACGCTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCCAAAGAGCTTGAGGAGGATGATCTCACATAA 870 0.4241 MADHLARAEDFEKKAEKKLSGWGLFSSKYDDAADLFDKSANSFKLAKSWDKAAATYLKLANCHLKMESKHEAAQAYVDASHCYKKTNISEAVSCLDHAVNLFCDIGRLSMAARYLKEIAELYESEQNIEQAVVYFEKSADFYQNEEVTTSANQCKQKVAQFSAQLEQYQTSIDIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDPVAISNALERYQELDPTFSGTREYRLLADVAAAVDEEDVGKFTDVVKDFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2223 289 CDD SNAP 7 278 IPR000744 GO:0006886
Mtr3g2223 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Mtr3g2223 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Mtr3g2223 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Mtr3g2223 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Mtr3g2223 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Mtr3g2223 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Mtr3g2223 289 SUPERFAMILY TPR-like 7 280 IPR011990 GO:0005515
Mtr3g2223 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
Mtr3g2223 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Mtr3g2223 289 Gene3D Tetratricopeptide repeat domain 5 288 IPR011990 GO:0005515
Mtr3g2223 289 Coils Coil 151 171 - -
Mtr3g2223 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Mtr3g2223 289 SMART tpr_5 53 86 IPR019734 GO:0005515
Mtr3g2223 289 SMART tpr_5 112 145 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2223 Mtr-Chr3 35873073 35878604 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2223 K15296 - gmx:100814639 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2223 3 35873073 35878604 Mtr5g2875 5 37323803 37329412 ECH
Mtr3g2223 3 35873073 35878604 Mtr3g2223 3 35873073 35878604 ECH
Mtr3g2223 3 35873073 35878604 Mtr5g2875 5 37323803 37329412 PCT