Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2107 ATGGCATACAAAGTAGATAATGAATATGATTATCTGTTCAAGATTGTACTCATTGGAGATTCTGGTGTTGGAAAATCCAATATTCTCTCTAGGTTTACCCGAAATGAGTTTTGTCTTGAATCTAAATCTACCATTGGTGTTGAATTCGCTACCAGAACTATACAGGTGGAAGGGAAGACAGTAAAGGCACAAATATGGGACACTGCAGGTCAAGAGAGGTACAGAGCAATCACAAGTGCATATTACAGAGGAGCTGTTGGTGCATTATTGGTGTACGACATAACCAAGAGACAAACATTTGAGAATGTGCAAAGGTGGCTTCGCGAACTAAGAGACCACGCAGATTCTAACATTGTTATTATGTTAGCAGGAAATAAATCTGACTTGAATCATCTAAGAGCAGTATCTTCTGACGATGCTCAAAATTTGGCTGAGAAAGAAACTCTTTCATTTCTAGAGACTTCAGCATTGGAAGCCCTAAATGTTGAGAAGGCATTTCAAACCATTTTGTTTGATATTTATCAAATTATAAGTAAAAAAGCACTTGCAGCACAAGAATCAGCTTCTACTACTAGTGTTCCTCATGGTACTACCATAAATGTGTCTAATATGTCTGGTACTGTTGAAAAGAAATCTTGTTGCTCCAATTAA 651 0.3717 MAYKVDNEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTIQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVQRWLRELRDHADSNIVIMLAGNKSDLNHLRAVSSDDAQNLAEKETLSFLETSALEALNVEKAFQTILFDIYQIISKKALAAQESASTTSVPHGTTINVSNMSGTVEKKSCCSN* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2107 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Mtr3g2107 216 ProSiteProfiles small GTPase Rab1 family profile. 8 214 - -
Mtr3g2107 216 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Mtr3g2107 216 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Mtr3g2107 216 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Mtr3g2107 216 SMART rab_sub_5 13 176 - -
Mtr3g2107 216 SMART ras_sub_4 10 176 - -
Mtr3g2107 216 Gene3D - 5 214 IPR027417 -
Mtr3g2107 216 SMART ran_sub_2 18 213 - -
Mtr3g2107 216 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Mtr3g2107 216 PRINTS Transforming protein P21 ras signature 13 34 - -
Mtr3g2107 216 PRINTS Transforming protein P21 ras signature 36 52 - -
Mtr3g2107 216 PRINTS Transforming protein P21 ras signature 54 76 - -
Mtr3g2107 216 PRINTS Transforming protein P21 ras signature 116 129 - -
Mtr3g2107 216 PRINTS Transforming protein P21 ras signature 151 173 - -
Mtr3g2107 216 CDD Rab11_like 10 174 - -
Mtr3g2107 216 ProSiteProfiles small GTPase Ras family profile. 7 216 IPR001806 GO:0003924|GO:0005525
Mtr3g2107 216 PANTHER - 1 216 - -
Mtr3g2107 216 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2107 Mtr-Chr3 34581476 34583572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2107 14 166 EF-hand Containing Proteins AT5G27540 29.091 1.34e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2107 K07904 - gmx:100799521 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2107 3 34581476 34583572 Mtr3g2107 3 34581476 34583572 ECH